Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4363

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4362 and Shewana3_4363 are separated by 49 nucleotidesShewana3_4363 and Shewana3_4364 are separated by 200 nucleotides Shewana3_4362: Shewana3_4362 - phosphoadenosine phosphosulfate reductase (RefSeq), at 247,614 to 249,209 _4362 Shewana3_4363: Shewana3_4363 - transposase Tn3 family protein (RefSeq), at 249,259 to 252,246 _4363 Shewana3_4364: Shewana3_4364 - manganese and iron superoxide dismutase (RefSeq), at 252,447 to 253,058 _4364 Position (kb) 249 250 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 248.585 kb on - strand, within Shewana3_4362at 248.617 kb on - strand, within Shewana3_4362at 248.665 kb on - strand, within Shewana3_4362at 248.702 kb on + strand, within Shewana3_4362at 248.741 kb on + strand, within Shewana3_4362at 248.924 kb on - strand, within Shewana3_4362at 249.008 kb on - strand, within Shewana3_4362at 249.057 kb on + strandat 249.178 kb on + strandat 249.310 kb on - strandat 249.409 kb on + strandat 249.439 kb on + strandat 249.577 kb on - strand, within Shewana3_4363at 249.577 kb on - strand, within Shewana3_4363at 249.676 kb on - strand, within Shewana3_4363at 249.756 kb on - strand, within Shewana3_4363at 249.862 kb on - strand, within Shewana3_4363at 249.862 kb on - strand, within Shewana3_4363at 249.900 kb on + strand, within Shewana3_4363at 250.000 kb on - strand, within Shewana3_4363at 250.062 kb on - strand, within Shewana3_4363at 250.084 kb on + strand, within Shewana3_4363at 250.181 kb on + strand, within Shewana3_4363at 250.201 kb on - strand, within Shewana3_4363at 250.339 kb on - strand, within Shewana3_4363at 250.341 kb on + strand, within Shewana3_4363at 250.349 kb on - strand, within Shewana3_4363at 250.650 kb on + strand, within Shewana3_4363at 250.836 kb on + strand, within Shewana3_4363at 251.060 kb on + strand, within Shewana3_4363at 251.142 kb on - strand, within Shewana3_4363at 251.802 kb on - strand, within Shewana3_4363at 252.015 kb on - strandat 252.022 kb on - strandat 252.022 kb on - strandat 252.022 kb on - strandat 252.480 kb on - strandat 252.545 kb on + strand, within Shewana3_4364at 252.604 kb on - strand, within Shewana3_4364at 252.704 kb on - strand, within Shewana3_4364at 253.035 kb on - strandat 253.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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248,585 - Shewana3_4362 0.61 -0.9
248,617 - Shewana3_4362 0.63 +0.1
248,665 - Shewana3_4362 0.66 -0.0
248,702 + Shewana3_4362 0.68 +0.8
248,741 + Shewana3_4362 0.71 -0.6
248,924 - Shewana3_4362 0.82 -0.6
249,008 - Shewana3_4362 0.87 +0.8
249,057 + +0.2
249,178 + -0.6
249,310 - +0.3
249,409 + -1.3
249,439 + -2.6
249,577 - Shewana3_4363 0.11 -0.3
249,577 - Shewana3_4363 0.11 -0.4
249,676 - Shewana3_4363 0.14 -0.0
249,756 - Shewana3_4363 0.17 +0.0
249,862 - Shewana3_4363 0.20 -0.8
249,862 - Shewana3_4363 0.20 -1.7
249,900 + Shewana3_4363 0.21 -1.2
250,000 - Shewana3_4363 0.25 +0.6
250,062 - Shewana3_4363 0.27 -1.1
250,084 + Shewana3_4363 0.28 -0.2
250,181 + Shewana3_4363 0.31 -1.0
250,201 - Shewana3_4363 0.32 -0.5
250,339 - Shewana3_4363 0.36 +0.5
250,341 + Shewana3_4363 0.36 -0.1
250,349 - Shewana3_4363 0.36 -0.2
250,650 + Shewana3_4363 0.47 -0.4
250,836 + Shewana3_4363 0.53 -0.3
251,060 + Shewana3_4363 0.60 -1.6
251,142 - Shewana3_4363 0.63 -0.2
251,802 - Shewana3_4363 0.85 +0.1
252,015 - +0.3
252,022 - -0.4
252,022 - -0.5
252,022 - +0.4
252,480 - +0.1
252,545 + Shewana3_4364 0.16 +4.1
252,604 - Shewana3_4364 0.26 -0.2
252,704 - Shewana3_4364 0.42 +0.2
253,035 - -0.4
253,077 - +0.0

Or see this region's nucleotide sequence