Experiment: Spectinomycin 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3677 and Shew_3678 are separated by 1 nucleotides Shew_3678 and Shew_3679 are separated by 237 nucleotides Shew_3679 and Shew_3680 are separated by 80 nucleotides
Shew_3677: Shew_3677 - isochorismate synthase (RefSeq), at 4,380,196 to 4,381,554
_3677
Shew_3678: Shew_3678 - hypothetical protein (RefSeq), at 4,381,556 to 4,382,311
_3678
Shew_3679: Shew_3679 - hypothetical protein (RefSeq), at 4,382,549 to 4,383,217
_3679
Shew_3680: Shew_3680 - GCN5-related N-acetyltransferase (RefSeq), at 4,383,298 to 4,383,759
_3680
Position (kb) 4381
4382
4383 Strain fitness (log2 ratio) -1
0
1
2 at 4380.573 kb on + strand, within Shew_3677 at 4380.829 kb on - strand, within Shew_3677 at 4380.843 kb on - strand, within Shew_3677 at 4380.898 kb on - strand, within Shew_3677 at 4381.212 kb on + strand, within Shew_3677 at 4381.212 kb on + strand, within Shew_3677 at 4381.246 kb on - strand, within Shew_3677 at 4381.548 kb on + strand at 4381.556 kb on - strand at 4381.639 kb on + strand, within Shew_3678 at 4381.647 kb on - strand, within Shew_3678 at 4381.647 kb on - strand, within Shew_3678 at 4381.774 kb on + strand, within Shew_3678 at 4381.825 kb on + strand, within Shew_3678 at 4381.855 kb on + strand, within Shew_3678 at 4381.908 kb on + strand, within Shew_3678 at 4381.908 kb on + strand, within Shew_3678 at 4381.934 kb on + strand, within Shew_3678 at 4381.968 kb on - strand, within Shew_3678 at 4382.829 kb on + strand, within Shew_3679 at 4382.847 kb on + strand, within Shew_3679 at 4382.961 kb on - strand, within Shew_3679 at 4383.062 kb on + strand, within Shew_3679 at 4383.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml remove 4,380,573 + Shew_3677 0.28 -0.0 4,380,829 - Shew_3677 0.47 -0.1 4,380,843 - Shew_3677 0.48 -0.6 4,380,898 - Shew_3677 0.52 -0.4 4,381,212 + Shew_3677 0.75 -0.3 4,381,212 + Shew_3677 0.75 +0.2 4,381,246 - Shew_3677 0.77 -0.2 4,381,548 + +1.8 4,381,556 - +0.6 4,381,639 + Shew_3678 0.11 +0.2 4,381,647 - Shew_3678 0.12 -0.4 4,381,647 - Shew_3678 0.12 -0.0 4,381,774 + Shew_3678 0.29 -0.4 4,381,825 + Shew_3678 0.36 -0.5 4,381,855 + Shew_3678 0.40 +0.4 4,381,908 + Shew_3678 0.47 -0.6 4,381,908 + Shew_3678 0.47 -0.0 4,381,934 + Shew_3678 0.50 -1.2 4,381,968 - Shew_3678 0.54 +0.1 4,382,829 + Shew_3679 0.42 -0.1 4,382,847 + Shew_3679 0.45 +0.2 4,382,961 - Shew_3679 0.62 -0.9 4,383,062 + Shew_3679 0.77 -0.7 4,383,154 - -0.3
Or see this region's nucleotide sequence