Strain Fitness in Shewanella loihica PV-4 around Shew_2837

Experiment: Spectinomycin 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrrmJ and Shew_2836 are separated by 82 nucleotidesShew_2836 and Shew_2837 are separated by 76 nucleotidesShew_2837 and carB are separated by 296 nucleotides Shew_2835: rrmJ - 23S rRNA methyltransferase J (RefSeq), at 3,361,002 to 3,361,631 rrmJ Shew_2836: Shew_2836 - hypothetical protein (RefSeq), at 3,361,714 to 3,362,022 _2836 Shew_2837: Shew_2837 - transcription elongation factor GreA (RefSeq), at 3,362,099 to 3,362,575 _2837 Shew_2838: carB - carbamoyl phosphate synthase large subunit (RefSeq), at 3,362,872 to 3,366,093 carB Position (kb) 3362 3363Strain fitness (log2 ratio) -2 -1 0 1at 3362.277 kb on + strand, within Shew_2837at 3362.613 kb on - strandat 3362.700 kb on - strandat 3362.870 kb on - strandat 3362.871 kb on - strandat 3362.871 kb on - strandat 3363.040 kb on + strandat 3363.290 kb on - strand, within carBat 3363.496 kb on - strand, within carB

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml
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3,362,277 + Shew_2837 0.37 -2.6
3,362,613 - -0.4
3,362,700 - -0.2
3,362,870 - +1.3
3,362,871 - +1.3
3,362,871 - +1.3
3,363,040 + +1.2
3,363,290 - carB Shew_2838 0.13 +1.1
3,363,496 - carB Shew_2838 0.19 +1.1

Or see this region's nucleotide sequence