Strain Fitness in Shewanella loihica PV-4 around Shew_2837
Experiment: Spectinomycin 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,362,277 | + | Shew_2837 | 0.37 | -2.6 | |
3,362,613 | - | -0.4 | |||
3,362,700 | - | -0.2 | |||
3,362,870 | - | +1.3 | |||
3,362,871 | - | +1.3 | |||
3,362,871 | - | +1.3 | |||
3,363,040 | + | +1.2 | |||
3,363,290 | - | carB | Shew_2838 | 0.13 | +1.1 |
3,363,496 | - | carB | Shew_2838 | 0.19 | +1.1 |
Or see this region's nucleotide sequence