Strain Fitness in Shewanella loihica PV-4 around Shew_1970

Experiment: Spectinomycin 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 10 mg/ml
2,275,879	+		Shew_1969	0.45	-0.3
2,276,374	+				+0.7
2,276,584	+		Shew_1970	0.22	+0.6
2,276,764	+		Shew_1970	0.32	-0.6
2,276,945	-		Shew_1970	0.43	+0.2
2,277,195	+		Shew_1970	0.57	+0.0
2,277,431	+		Shew_1970	0.71	+0.3
2,277,439	-		Shew_1970	0.71	-0.1
2,277,690	-		Shew_1970	0.86	+0.9
2,277,740	-		Shew_1970	0.89	+1.3
2,277,936	+				+0.5
2,277,936	+				+0.2
2,277,936	+				+0.2
2,277,936	+				+0.2
2,277,986	-				+0.0
2,278,047	-				-0.4
2,278,052	-				-1.6
2,278,061	-				+0.5
2,278,111	-				+0.1
2,278,112	-				+0.3
2,278,127	-				+1.1
2,278,214	-				-0.2
2,278,258	+				+1.1
2,278,271	-				+0.9
2,278,303	-				+0.1
2,278,306	+				-0.2
2,278,319	+				+1.4
2,278,324	-				+0.4
2,278,332	-				-0.2
2,278,332	-				-0.1
2,278,348	+				-0.9
2,278,348	+				+0.3
2,278,395	+				-0.2
2,278,397	+				-0.6
2,278,397	+				-0.2
2,278,409	+				+0.4
2,278,465	+				-0.0
2,278,540	+				+0.7
2,278,543	+				+0.3
2,278,545	+				+0.4
2,278,551	-				+0.2
2,278,553	-				+0.0
2,278,564	+				-1.3
2,278,564	+				+0.4
2,278,564	+				+0.1
2,278,564	+				+0.5
2,278,564	+				-0.4
2,278,564	+				+0.2
2,278,575	+				+0.3
2,278,576	+				-0.1
2,278,576	+				-0.1
2,278,576	+				+0.3
2,278,576	+				-2.2
2,278,583	-				-1.3
2,278,584	-				-1.0
2,278,584	-				+0.1
2,278,584	-				-0.2
2,278,584	-				-0.0
2,278,584	-				-1.6
2,278,584	-				-0.6
2,278,584	-				-1.6
2,278,584	-				+0.1
2,278,584	-				-1.5
2,278,584	-				+1.0
2,278,584	-				+0.5
2,278,586	+				-0.1
2,278,586	+				+0.8
2,278,587	+				-0.0
2,278,587	+				-1.4
2,278,587	+				-0.1
2,278,587	+				+0.0
2,278,594	-				+0.6
2,278,594	-				-0.4
2,278,595	-				+0.4
2,278,606	-		Shew_1971	0.11	+0.4
2,278,617	-		Shew_1971	0.11	+0.6
2,278,681	+		Shew_1971	0.17	+0.4
2,278,688	+		Shew_1971	0.17	+0.7
2,278,689	-		Shew_1971	0.18	+0.6
2,278,693	+		Shew_1971	0.18	+0.1
2,278,693	+		Shew_1971	0.18	+0.2
2,278,693	+		Shew_1971	0.18	+0.7
2,278,698	-		Shew_1971	0.18	+0.6
2,278,700	+		Shew_1971	0.18	-1.8
2,278,701	-		Shew_1971	0.19	+1.3
2,278,701	-		Shew_1971	0.19	-0.2
2,278,702	+		Shew_1971	0.19	-0.6
2,278,702	+		Shew_1971	0.19	-1.3
2,278,702	+		Shew_1971	0.19	+0.5
2,278,702	+		Shew_1971	0.19	+1.1
2,278,702	+		Shew_1971	0.19	-0.6
2,278,702	-		Shew_1971	0.19	-0.4
2,278,702	+		Shew_1971	0.19	+0.6
2,278,702	+		Shew_1971	0.19	+1.5
2,278,702	+		Shew_1971	0.19	+0.1
2,278,702	-		Shew_1971	0.19	-1.2
2,278,702	+		Shew_1971	0.19	+0.6
2,278,702	+		Shew_1971	0.19	+0.7
2,278,702	+		Shew_1971	0.19	-0.1
2,278,702	+		Shew_1971	0.19	+0.1
2,278,702	+		Shew_1971	0.19	-0.1
2,278,702	+		Shew_1971	0.19	-1.0
2,278,702	+		Shew_1971	0.19	+1.1
2,278,702	+		Shew_1971	0.19	+0.3
2,278,702	+		Shew_1971	0.19	-1.4
2,278,702	+		Shew_1971	0.19	+1.0
2,278,702	+		Shew_1971	0.19	-0.1
2,278,702	+		Shew_1971	0.19	+1.2
2,278,710	-		Shew_1971	0.19	-0.2
2,278,710	-		Shew_1971	0.19	+0.3
2,278,710	-		Shew_1971	0.19	-0.6
2,278,710	-		Shew_1971	0.19	-2.2
2,278,710	-		Shew_1971	0.19	-1.3
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	-1.2
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	-0.1
2,278,710	-		Shew_1971	0.19	+1.1
2,278,710	-		Shew_1971	0.19	+0.3
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	-1.9
2,278,710	-		Shew_1971	0.19	-0.3
2,278,710	-		Shew_1971	0.19	-1.1
2,278,710	-		Shew_1971	0.19	+1.2
2,278,710	-		Shew_1971	0.19	-1.5
2,278,710	-		Shew_1971	0.19	+0.1
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	-0.2
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	+0.5
2,278,710	-		Shew_1971	0.19	+0.0
2,278,710	-		Shew_1971	0.19	-0.6
2,278,710	-		Shew_1971	0.19	+0.8
2,278,710	-		Shew_1971	0.19	+0.7
2,278,710	-		Shew_1971	0.19	+0.8
2,278,751	+		Shew_1971	0.23	+0.8
2,278,759	-		Shew_1971	0.23	+0.5
2,278,768	-		Shew_1971	0.24	-0.3
2,278,770	+		Shew_1971	0.24	-0.2
2,278,770	+		Shew_1971	0.24	+0.2
2,278,778	-		Shew_1971	0.25	+0.2
2,278,778	-		Shew_1971	0.25	+0.7
2,278,778	-		Shew_1971	0.25	-0.7
2,278,780	+		Shew_1971	0.25	-1.2
2,278,780	+		Shew_1971	0.25	-0.5
2,278,815	+		Shew_1971	0.28	+0.0
2,278,815	+		Shew_1971	0.28	+0.1
2,278,910	+		Shew_1971	0.36	+0.6
2,278,913	-		Shew_1971	0.37	-0.6
2,278,919	+		Shew_1971	0.37	+0.8