Strain Fitness in Shewanella loihica PV-4 around Shew_1912

Experiment: Spectinomycin 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1911 and Shew_1912 are separated by 106 nucleotidesShew_1912 and Shew_1913 are separated by 28 nucleotidesShew_1913 and Shew_1914 are separated by 302 nucleotides Shew_1911: Shew_1911 - hypothetical protein (RefSeq), at 2,209,370 to 2,210,011 _1911 Shew_1912: Shew_1912 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,210,118 to 2,211,443 _1912 Shew_1913: Shew_1913 - hypothetical protein (RefSeq), at 2,211,472 to 2,212,059 _1913 Shew_1914: Shew_1914 - aminotransferase AlaT (RefSeq), at 2,212,362 to 2,213,576 _1914 Position (kb) 2210 2211 2212Strain fitness (log2 ratio) -2 -1 0 1at 2209.300 kb on + strandat 2209.307 kb on + strandat 2210.793 kb on - strand, within Shew_1912at 2212.020 kb on - strandat 2212.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml
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2,209,300 + +0.1
2,209,307 + -2.2
2,210,793 - Shew_1912 0.51 +0.8
2,212,020 - +0.2
2,212,375 - +0.9

Or see this region's nucleotide sequence