Experiment: Spectinomycin 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0511 and Shew_0512 overlap by 8 nucleotides Shew_0512 and Shew_0513 overlap by 1 nucleotides
Shew_0511: Shew_0511 - HlyD family type I secretion membrane fusion protein (RefSeq), at 577,130 to 578,455
_0511
Shew_0512: Shew_0512 - ABC transporter-related protein (RefSeq), at 578,448 to 580,547
_0512
Shew_0513: Shew_0513 - ABC transporter-related protein (RefSeq), at 580,547 to 582,205
_0513
Position (kb) 578
579
580
581 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 577.453 kb on + strand, within Shew_0511 at 577.546 kb on - strand, within Shew_0511 at 577.634 kb on - strand, within Shew_0511 at 577.896 kb on + strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 578.103 kb on + strand, within Shew_0511 at 578.303 kb on - strand, within Shew_0511 at 578.329 kb on - strand at 578.539 kb on + strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.642 kb on + strand at 578.893 kb on - strand, within Shew_0512 at 579.081 kb on + strand, within Shew_0512 at 579.179 kb on + strand, within Shew_0512 at 579.187 kb on - strand, within Shew_0512 at 579.291 kb on - strand, within Shew_0512 at 579.301 kb on - strand, within Shew_0512 at 579.301 kb on - strand, within Shew_0512 at 579.586 kb on + strand, within Shew_0512 at 579.644 kb on + strand, within Shew_0512 at 579.866 kb on + strand, within Shew_0512 at 579.891 kb on + strand, within Shew_0512 at 579.952 kb on + strand, within Shew_0512 at 579.960 kb on - strand, within Shew_0512 at 580.179 kb on + strand, within Shew_0512 at 580.187 kb on - strand, within Shew_0512 at 580.425 kb on + strand at 580.434 kb on + strand at 580.987 kb on - strand, within Shew_0513 at 581.008 kb on + strand, within Shew_0513 at 581.008 kb on + strand, within Shew_0513 at 581.388 kb on - strand, within Shew_0513 at 581.388 kb on - strand, within Shew_0513 at 581.436 kb on - strand, within Shew_0513 at 581.473 kb on - strand, within Shew_0513 at 581.511 kb on - strand, within Shew_0513
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 10 mg/ml remove 577,453 + Shew_0511 0.24 +0.4 577,546 - Shew_0511 0.31 -1.0 577,634 - Shew_0511 0.38 -1.2 577,896 + Shew_0511 0.58 +0.2 577,919 - Shew_0511 0.60 +1.5 577,919 - Shew_0511 0.60 +1.5 578,103 + Shew_0511 0.73 +0.5 578,303 - Shew_0511 0.88 +0.4 578,329 - -0.8 578,539 + -0.1 578,547 - +0.2 578,547 - -0.1 578,547 - +0.6 578,547 - -0.5 578,642 + +0.2 578,893 - Shew_0512 0.21 -0.0 579,081 + Shew_0512 0.30 -0.8 579,179 + Shew_0512 0.35 -0.1 579,187 - Shew_0512 0.35 -1.0 579,291 - Shew_0512 0.40 -0.9 579,301 - Shew_0512 0.41 +3.3 579,301 - Shew_0512 0.41 -0.0 579,586 + Shew_0512 0.54 +0.0 579,644 + Shew_0512 0.57 -1.9 579,866 + Shew_0512 0.68 +0.1 579,891 + Shew_0512 0.69 +1.9 579,952 + Shew_0512 0.72 -0.6 579,960 - Shew_0512 0.72 +0.8 580,179 + Shew_0512 0.82 -0.6 580,187 - Shew_0512 0.83 +0.3 580,425 + -0.1 580,434 + +0.2 580,987 - Shew_0513 0.27 +0.8 581,008 + Shew_0513 0.28 -0.0 581,008 + Shew_0513 0.28 +0.0 581,388 - Shew_0513 0.51 -0.0 581,388 - Shew_0513 0.51 -0.3 581,436 - Shew_0513 0.54 -0.3 581,473 - Shew_0513 0.56 -1.0 581,511 - Shew_0513 0.58 -0.8
Or see this region's nucleotide sequence