Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3668.1

Experiment: MOKA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3666.1 and Xcc-8004.3667.1 are separated by 76 nucleotidesXcc-8004.3667.1 and Xcc-8004.3668.1 are separated by 123 nucleotidesXcc-8004.3668.1 and Xcc-8004.3669.1 are separated by 174 nucleotides Xcc-8004.3666.1: Xcc-8004.3666.1 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 3,546,354 to 3,547,055 Xcc-8004.3666.1 Xcc-8004.3667.1: Xcc-8004.3667.1 - FIG01210304: hypothetical protein, at 3,547,132 to 3,547,596 Xcc-8004.3667.1 Xcc-8004.3668.1: Xcc-8004.3668.1 - putative; ORF located using Glimmer/Genemark, at 3,547,720 to 3,548,361 Xcc-8004.3668.1 Xcc-8004.3669.1: Xcc-8004.3669.1 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-), at 3,548,536 to 3,549,870 Xcc-8004.3669.1 Position (kb) 3547 3548 3549Strain fitness (log2 ratio) -2 -1 0 1 2at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.759 kb on + strand, within Xcc-8004.3666.1at 3546.760 kb on - strand, within Xcc-8004.3666.1at 3546.837 kb on - strand, within Xcc-8004.3666.1at 3546.925 kb on + strand, within Xcc-8004.3666.1at 3546.926 kb on - strand, within Xcc-8004.3666.1at 3547.081 kb on + strandat 3547.081 kb on + strandat 3547.082 kb on - strandat 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.181 kb on + strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.182 kb on - strand, within Xcc-8004.3667.1at 3547.184 kb on + strand, within Xcc-8004.3667.1at 3547.184 kb on + strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.185 kb on - strand, within Xcc-8004.3667.1at 3547.326 kb on - strand, within Xcc-8004.3667.1at 3547.536 kb on + strand, within Xcc-8004.3667.1at 3547.536 kb on + strand, within Xcc-8004.3667.1at 3547.536 kb on + strand, within Xcc-8004.3667.1at 3547.536 kb on + strand, within Xcc-8004.3667.1at 3547.536 kb on + strand, within Xcc-8004.3667.1at 3547.536 kb on + strand, within Xcc-8004.3667.1at 3547.537 kb on - strand, within Xcc-8004.3667.1at 3547.537 kb on - strand, within Xcc-8004.3667.1at 3547.538 kb on + strand, within Xcc-8004.3667.1at 3547.538 kb on + strand, within Xcc-8004.3667.1at 3547.538 kb on + strand, within Xcc-8004.3667.1at 3547.538 kb on + strand, within Xcc-8004.3667.1at 3547.539 kb on - strand, within Xcc-8004.3667.1at 3547.539 kb on - strand, within Xcc-8004.3667.1at 3547.539 kb on - strand, within Xcc-8004.3667.1at 3547.539 kb on - strand, within Xcc-8004.3667.1at 3547.636 kb on + strandat 3547.636 kb on + strandat 3547.636 kb on + strandat 3547.637 kb on - strandat 3547.637 kb on - strandat 3547.637 kb on - strandat 3547.637 kb on - strandat 3547.637 kb on - strandat 3547.666 kb on + strandat 3547.666 kb on + strandat 3547.666 kb on + strandat 3547.667 kb on - strandat 3547.686 kb on + strandat 3547.686 kb on + strandat 3547.686 kb on + strandat 3547.687 kb on - strandat 3547.687 kb on - strandat 3547.687 kb on - strandat 3547.687 kb on - strandat 3547.928 kb on + strand, within Xcc-8004.3668.1at 3547.928 kb on + strand, within Xcc-8004.3668.1at 3547.928 kb on + strand, within Xcc-8004.3668.1at 3547.928 kb on + strand, within Xcc-8004.3668.1at 3547.929 kb on - strand, within Xcc-8004.3668.1at 3548.373 kb on + strandat 3548.390 kb on + strandat 3548.391 kb on - strandat 3548.391 kb on - strandat 3548.484 kb on + strandat 3548.484 kb on + strandat 3548.484 kb on + strandat 3548.485 kb on - strandat 3548.681 kb on + strand, within Xcc-8004.3669.1at 3548.681 kb on + strand, within Xcc-8004.3669.1at 3548.681 kb on + strand, within Xcc-8004.3669.1at 3548.681 kb on + strand, within Xcc-8004.3669.1at 3548.681 kb on + strand, within Xcc-8004.3669.1at 3548.681 kb on + strand, within Xcc-8004.3669.1at 3548.682 kb on - strand, within Xcc-8004.3669.1at 3548.822 kb on + strand, within Xcc-8004.3669.1at 3548.822 kb on + strand, within Xcc-8004.3669.1at 3548.822 kb on + strand, within Xcc-8004.3669.1at 3548.823 kb on - strand, within Xcc-8004.3669.1at 3548.920 kb on - strand, within Xcc-8004.3669.1

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Per-strain Table

Position Strand Gene LocusTag Fraction MOKA
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3,546,759 + Xcc-8004.3666.1 0.58 +0.2
3,546,759 + Xcc-8004.3666.1 0.58 +0.1
3,546,759 + Xcc-8004.3666.1 0.58 -1.0
3,546,759 + Xcc-8004.3666.1 0.58 -0.3
3,546,759 + Xcc-8004.3666.1 0.58 -0.8
3,546,759 + Xcc-8004.3666.1 0.58 -1.2
3,546,760 - Xcc-8004.3666.1 0.58 +0.4
3,546,837 - Xcc-8004.3666.1 0.69 +0.4
3,546,925 + Xcc-8004.3666.1 0.81 -0.3
3,546,926 - Xcc-8004.3666.1 0.81 +0.2
3,547,081 + -0.6
3,547,081 + -0.2
3,547,082 - -0.0
3,547,181 + Xcc-8004.3667.1 0.11 +0.4
3,547,181 + Xcc-8004.3667.1 0.11 +0.1
3,547,181 + Xcc-8004.3667.1 0.11 -0.3
3,547,181 + Xcc-8004.3667.1 0.11 +1.6
3,547,181 + Xcc-8004.3667.1 0.11 +0.2
3,547,181 + Xcc-8004.3667.1 0.11 -0.5
3,547,181 + Xcc-8004.3667.1 0.11 +0.9
3,547,181 + Xcc-8004.3667.1 0.11 -0.7
3,547,182 - Xcc-8004.3667.1 0.11 +0.3
3,547,182 - Xcc-8004.3667.1 0.11 +0.1
3,547,182 - Xcc-8004.3667.1 0.11 -0.9
3,547,182 - Xcc-8004.3667.1 0.11 -0.4
3,547,182 - Xcc-8004.3667.1 0.11 -0.7
3,547,182 - Xcc-8004.3667.1 0.11 +0.1
3,547,182 - Xcc-8004.3667.1 0.11 -0.0
3,547,184 + Xcc-8004.3667.1 0.11 -1.0
3,547,184 + Xcc-8004.3667.1 0.11 +0.5
3,547,185 - Xcc-8004.3667.1 0.11 +0.5
3,547,185 - Xcc-8004.3667.1 0.11 +0.8
3,547,185 - Xcc-8004.3667.1 0.11 -0.1
3,547,185 - Xcc-8004.3667.1 0.11 -0.1
3,547,185 - Xcc-8004.3667.1 0.11 +0.1
3,547,326 - Xcc-8004.3667.1 0.42 -0.2
3,547,536 + Xcc-8004.3667.1 0.87 -0.8
3,547,536 + Xcc-8004.3667.1 0.87 +0.1
3,547,536 + Xcc-8004.3667.1 0.87 +1.1
3,547,536 + Xcc-8004.3667.1 0.87 +0.2
3,547,536 + Xcc-8004.3667.1 0.87 +0.4
3,547,536 + Xcc-8004.3667.1 0.87 -0.2
3,547,537 - Xcc-8004.3667.1 0.87 +0.8
3,547,537 - Xcc-8004.3667.1 0.87 +0.4
3,547,538 + Xcc-8004.3667.1 0.87 -0.3
3,547,538 + Xcc-8004.3667.1 0.87 -1.3
3,547,538 + Xcc-8004.3667.1 0.87 -0.1
3,547,538 + Xcc-8004.3667.1 0.87 -0.5
3,547,539 - Xcc-8004.3667.1 0.88 +0.8
3,547,539 - Xcc-8004.3667.1 0.88 +0.6
3,547,539 - Xcc-8004.3667.1 0.88 -0.7
3,547,539 - Xcc-8004.3667.1 0.88 +0.5
3,547,636 + -0.0
3,547,636 + -0.3
3,547,636 + -1.1
3,547,637 - +0.8
3,547,637 - +0.3
3,547,637 - +0.6
3,547,637 - -0.3
3,547,637 - -0.7
3,547,666 + +2.2
3,547,666 + +0.3
3,547,666 + +0.2
3,547,667 - -0.4
3,547,686 + -0.1
3,547,686 + -0.0
3,547,686 + +0.2
3,547,687 - -0.0
3,547,687 - -1.1
3,547,687 - +0.0
3,547,687 - -0.8
3,547,928 + Xcc-8004.3668.1 0.32 -0.9
3,547,928 + Xcc-8004.3668.1 0.32 -0.8
3,547,928 + Xcc-8004.3668.1 0.32 -0.2
3,547,928 + Xcc-8004.3668.1 0.32 +0.4
3,547,929 - Xcc-8004.3668.1 0.33 -0.8
3,548,373 + +0.0
3,548,390 + -2.0
3,548,391 - +1.5
3,548,391 - -0.5
3,548,484 + -0.1
3,548,484 + +0.8
3,548,484 + +0.4
3,548,485 - +0.9
3,548,681 + Xcc-8004.3669.1 0.11 +0.3
3,548,681 + Xcc-8004.3669.1 0.11 -0.8
3,548,681 + Xcc-8004.3669.1 0.11 -0.2
3,548,681 + Xcc-8004.3669.1 0.11 -0.2
3,548,681 + Xcc-8004.3669.1 0.11 -0.6
3,548,681 + Xcc-8004.3669.1 0.11 +0.8
3,548,682 - Xcc-8004.3669.1 0.11 +1.5
3,548,822 + Xcc-8004.3669.1 0.21 +0.5
3,548,822 + Xcc-8004.3669.1 0.21 -0.1
3,548,822 + Xcc-8004.3669.1 0.21 -0.8
3,548,823 - Xcc-8004.3669.1 0.21 +0.2
3,548,920 - Xcc-8004.3669.1 0.29 -0.3

Or see this region's nucleotide sequence