Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_823

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_822 and Pf6N2E2_823 are separated by 297 nucleotidesPf6N2E2_823 and Pf6N2E2_824 overlap by 4 nucleotides Pf6N2E2_822 - TPR domain protein, at 957,204 to 958,262 _822 Pf6N2E2_823 - Outer membrane protein OprN, at 958,560 to 959,981 _823 Pf6N2E2_824 - Multidrug efflux transporter MexF, at 959,978 to 963,157 _824 Position (kb) 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 957.570 kb on + strand, within Pf6N2E2_822at 957.606 kb on + strand, within Pf6N2E2_822at 957.606 kb on + strand, within Pf6N2E2_822at 957.607 kb on - strand, within Pf6N2E2_822at 958.016 kb on - strand, within Pf6N2E2_822at 958.084 kb on + strand, within Pf6N2E2_822at 958.084 kb on + strand, within Pf6N2E2_822at 958.085 kb on - strand, within Pf6N2E2_822at 958.142 kb on - strand, within Pf6N2E2_822at 958.191 kb on + strandat 958.240 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.609 kb on + strandat 958.851 kb on + strand, within Pf6N2E2_823at 958.851 kb on + strand, within Pf6N2E2_823at 958.851 kb on + strand, within Pf6N2E2_823at 958.852 kb on - strand, within Pf6N2E2_823at 958.852 kb on - strand, within Pf6N2E2_823at 958.852 kb on - strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.864 kb on + strand, within Pf6N2E2_823at 958.865 kb on - strand, within Pf6N2E2_823at 958.946 kb on + strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strandat 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 958.947 kb on - strand, within Pf6N2E2_823at 959.446 kb on + strand, within Pf6N2E2_823at 959.488 kb on + strand, within Pf6N2E2_823at 959.593 kb on + strand, within Pf6N2E2_823at 959.911 kb on + strandat 959.911 kb on + strandat 960.053 kb on + strandat 960.053 kb on + strandat 960.054 kb on - strandat 960.054 kb on - strandat 960.057 kb on + strandat 960.057 kb on + strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.058 kb on - strandat 960.277 kb on + strandat 960.277 kb on + strandat 960.278 kb on - strandat 960.332 kb on + strand, within Pf6N2E2_824at 960.456 kb on + strand, within Pf6N2E2_824at 960.456 kb on + strand, within Pf6N2E2_824at 960.488 kb on + strand, within Pf6N2E2_824at 960.488 kb on + strand, within Pf6N2E2_824at 960.489 kb on - strand, within Pf6N2E2_824at 960.489 kb on - strand, within Pf6N2E2_824at 960.540 kb on + strand, within Pf6N2E2_824at 960.540 kb on + strand, within Pf6N2E2_824at 960.561 kb on + strand, within Pf6N2E2_824at 960.562 kb on - strand, within Pf6N2E2_824at 960.631 kb on - strand, within Pf6N2E2_824at 960.678 kb on + strand, within Pf6N2E2_824at 960.678 kb on + strand, within Pf6N2E2_824at 960.828 kb on + strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.829 kb on - strand, within Pf6N2E2_824at 960.861 kb on + strand, within Pf6N2E2_824at 960.861 kb on + strand, within Pf6N2E2_824at 960.862 kb on - strand, within Pf6N2E2_824at 960.876 kb on + strand, within Pf6N2E2_824at 960.876 kb on + strand, within Pf6N2E2_824at 960.877 kb on - strand, within Pf6N2E2_824at 960.877 kb on - strand, within Pf6N2E2_824at 960.975 kb on + strand, within Pf6N2E2_824at 960.976 kb on - strand, within Pf6N2E2_824at 960.976 kb on - strand, within Pf6N2E2_824

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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957,570 + Pf6N2E2_822 0.35 -1.2
957,606 + Pf6N2E2_822 0.38 -1.2
957,606 + Pf6N2E2_822 0.38 +0.2
957,607 - Pf6N2E2_822 0.38 -2.0
958,016 - Pf6N2E2_822 0.77 +0.4
958,084 + Pf6N2E2_822 0.83 -0.1
958,084 + Pf6N2E2_822 0.83 +1.9
958,085 - Pf6N2E2_822 0.83 -0.4
958,142 - Pf6N2E2_822 0.89 -2.6
958,191 + +0.4
958,240 + +0.7
958,609 + +1.1
958,609 + +0.6
958,609 + +0.9
958,609 + +0.1
958,609 + -0.6
958,609 + -1.0
958,851 + Pf6N2E2_823 0.20 -1.1
958,851 + Pf6N2E2_823 0.20 +0.5
958,851 + Pf6N2E2_823 0.20 +0.9
958,852 - Pf6N2E2_823 0.21 +0.0
958,852 - Pf6N2E2_823 0.21 -0.6
958,852 - Pf6N2E2_823 0.21 -0.5
958,864 + Pf6N2E2_823 0.21 -0.5
958,864 + Pf6N2E2_823 0.21 +0.3
958,864 + Pf6N2E2_823 0.21 -0.6
958,864 + Pf6N2E2_823 0.21 -0.7
958,865 - Pf6N2E2_823 0.21 -2.2
958,946 + Pf6N2E2_823 0.27 -0.6
958,947 - Pf6N2E2_823 0.27 -0.4
958,947 - +0.5
958,947 - Pf6N2E2_823 0.27 -0.1
958,947 - Pf6N2E2_823 0.27 +0.1
958,947 - Pf6N2E2_823 0.27 -2.3
958,947 - Pf6N2E2_823 0.27 +1.3
959,446 + Pf6N2E2_823 0.62 -0.1
959,488 + Pf6N2E2_823 0.65 +1.5
959,593 + Pf6N2E2_823 0.73 +0.1
959,911 + -0.2
959,911 + +1.4
960,053 + -0.5
960,053 + -0.4
960,054 - +0.2
960,054 - +1.4
960,057 + -1.4
960,057 + +0.2
960,058 - +0.2
960,058 - +0.9
960,058 - -0.3
960,058 - +0.5
960,058 - +1.2
960,058 - +0.1
960,058 - +0.2
960,058 - -0.2
960,277 + +0.5
960,277 + -1.3
960,278 - -0.3
960,332 + Pf6N2E2_824 0.11 -1.8
960,456 + Pf6N2E2_824 0.15 +1.6
960,456 + Pf6N2E2_824 0.15 +1.2
960,488 + Pf6N2E2_824 0.16 -0.2
960,488 + Pf6N2E2_824 0.16 -0.4
960,489 - Pf6N2E2_824 0.16 +1.0
960,489 - Pf6N2E2_824 0.16 -2.0
960,540 + Pf6N2E2_824 0.18 -1.0
960,540 + Pf6N2E2_824 0.18 -1.1
960,561 + Pf6N2E2_824 0.18 +1.9
960,562 - Pf6N2E2_824 0.18 +0.6
960,631 - Pf6N2E2_824 0.21 +1.4
960,678 + Pf6N2E2_824 0.22 +0.8
960,678 + Pf6N2E2_824 0.22 -2.3
960,828 + Pf6N2E2_824 0.27 +0.8
960,829 - Pf6N2E2_824 0.27 +0.2
960,829 - Pf6N2E2_824 0.27 -0.7
960,829 - Pf6N2E2_824 0.27 -0.3
960,861 + Pf6N2E2_824 0.28 -3.1
960,861 + Pf6N2E2_824 0.28 +0.9
960,862 - Pf6N2E2_824 0.28 -0.3
960,876 + Pf6N2E2_824 0.28 +0.2
960,876 + Pf6N2E2_824 0.28 -2.8
960,877 - Pf6N2E2_824 0.28 +0.5
960,877 - Pf6N2E2_824 0.28 -0.9
960,975 + Pf6N2E2_824 0.31 +1.5
960,976 - Pf6N2E2_824 0.31 -0.1
960,976 - Pf6N2E2_824 0.31 -0.4

Or see this region's nucleotide sequence