Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5884 and Pf6N2E2_5885 overlap by 10 nucleotides Pf6N2E2_5885 and Pf6N2E2_5886 overlap by 1 nucleotides Pf6N2E2_5886 and Pf6N2E2_5887 are separated by 253 nucleotides
Pf6N2E2_5884 - Sensor histidine kinase, at 6,704,068 to 6,704,898
_5884
Pf6N2E2_5885 - Sensor histidine kinase, at 6,704,889 to 6,705,110
_5885
Pf6N2E2_5886 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 6,705,110 to 6,705,868
_5886
Pf6N2E2_5887 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 6,706,122 to 6,706,856
_5887
Position (kb)
6705
6706 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.301 kb on + strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.302 kb on - strand, within Pf6N2E2_5884 at 6704.429 kb on - strand, within Pf6N2E2_5884 at 6704.429 kb on - strand, within Pf6N2E2_5884 at 6704.429 kb on - strand, within Pf6N2E2_5884 at 6704.528 kb on + strand, within Pf6N2E2_5884 at 6704.528 kb on + strand, within Pf6N2E2_5884 at 6704.529 kb on - strand, within Pf6N2E2_5884 at 6704.529 kb on - strand, within Pf6N2E2_5884 at 6704.529 kb on - strand, within Pf6N2E2_5884 at 6704.727 kb on + strand, within Pf6N2E2_5884 at 6704.728 kb on - strand, within Pf6N2E2_5884 at 6704.728 kb on - strand, within Pf6N2E2_5884 at 6705.138 kb on + strand at 6705.138 kb on + strand at 6705.138 kb on + strand at 6705.139 kb on - strand at 6705.139 kb on - strand at 6705.139 kb on - strand at 6705.212 kb on + strand, within Pf6N2E2_5886 at 6705.213 kb on - strand, within Pf6N2E2_5886 at 6705.213 kb on - strand, within Pf6N2E2_5886 at 6705.213 kb on - strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.747 kb on + strand, within Pf6N2E2_5886 at 6705.747 kb on + strand, within Pf6N2E2_5886 at 6705.747 kb on + strand, within Pf6N2E2_5886 at 6705.888 kb on + strand at 6705.889 kb on - strand at 6705.889 kb on - strand at 6705.933 kb on + strand at 6705.933 kb on + strand at 6705.933 kb on + strand at 6705.934 kb on - strand at 6706.008 kb on + strand at 6706.008 kb on + strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.077 kb on + strand at 6706.078 kb on - strand at 6706.078 kb on - strand at 6706.078 kb on - strand at 6706.081 kb on + strand at 6706.081 kb on + strand at 6706.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 6,704,301 + Pf6N2E2_5884 0.28 -1.7 6,704,301 + Pf6N2E2_5884 0.28 +1.0 6,704,301 + Pf6N2E2_5884 0.28 -1.0 6,704,301 + Pf6N2E2_5884 0.28 -0.4 6,704,301 + Pf6N2E2_5884 0.28 -0.1 6,704,301 + Pf6N2E2_5884 0.28 -1.5 6,704,301 + Pf6N2E2_5884 0.28 -1.6 6,704,301 + Pf6N2E2_5884 0.28 +0.4 6,704,301 + Pf6N2E2_5884 0.28 -3.1 6,704,301 + Pf6N2E2_5884 0.28 -0.1 6,704,302 - Pf6N2E2_5884 0.28 -2.1 6,704,302 - Pf6N2E2_5884 0.28 +2.0 6,704,302 - Pf6N2E2_5884 0.28 -0.3 6,704,302 - Pf6N2E2_5884 0.28 -2.0 6,704,302 - Pf6N2E2_5884 0.28 -1.3 6,704,302 - Pf6N2E2_5884 0.28 -1.0 6,704,302 - Pf6N2E2_5884 0.28 -2.1 6,704,302 - Pf6N2E2_5884 0.28 -3.0 6,704,302 - Pf6N2E2_5884 0.28 -1.3 6,704,302 - Pf6N2E2_5884 0.28 -1.0 6,704,302 - Pf6N2E2_5884 0.28 -1.9 6,704,302 - Pf6N2E2_5884 0.28 -0.2 6,704,302 - Pf6N2E2_5884 0.28 -2.5 6,704,302 - Pf6N2E2_5884 0.28 -1.5 6,704,302 - Pf6N2E2_5884 0.28 -2.4 6,704,429 - Pf6N2E2_5884 0.43 -0.3 6,704,429 - Pf6N2E2_5884 0.43 -1.3 6,704,429 - Pf6N2E2_5884 0.43 -1.5 6,704,528 + Pf6N2E2_5884 0.55 +0.8 6,704,528 + Pf6N2E2_5884 0.55 -1.1 6,704,529 - Pf6N2E2_5884 0.55 +0.0 6,704,529 - Pf6N2E2_5884 0.55 -1.6 6,704,529 - Pf6N2E2_5884 0.55 -1.2 6,704,727 + Pf6N2E2_5884 0.79 +0.6 6,704,728 - Pf6N2E2_5884 0.79 -0.3 6,704,728 - Pf6N2E2_5884 0.79 -0.4 6,705,138 + +0.3 6,705,138 + +1.0 6,705,138 + -0.4 6,705,139 - -1.6 6,705,139 - -0.8 6,705,139 - +1.2 6,705,212 + Pf6N2E2_5886 0.13 +1.5 6,705,213 - Pf6N2E2_5886 0.14 +1.2 6,705,213 - Pf6N2E2_5886 0.14 -1.2 6,705,213 - Pf6N2E2_5886 0.14 +0.5 6,705,513 + Pf6N2E2_5886 0.53 +0.9 6,705,513 + Pf6N2E2_5886 0.53 -1.2 6,705,513 + Pf6N2E2_5886 0.53 +0.0 6,705,513 + Pf6N2E2_5886 0.53 -0.2 6,705,513 + Pf6N2E2_5886 0.53 +0.8 6,705,513 + Pf6N2E2_5886 0.53 -0.9 6,705,514 - Pf6N2E2_5886 0.53 +2.7 6,705,514 - Pf6N2E2_5886 0.53 +1.6 6,705,514 - Pf6N2E2_5886 0.53 +2.2 6,705,514 - Pf6N2E2_5886 0.53 -0.2 6,705,514 - Pf6N2E2_5886 0.53 +1.7 6,705,747 + Pf6N2E2_5886 0.84 -1.4 6,705,747 + Pf6N2E2_5886 0.84 +1.0 6,705,747 + Pf6N2E2_5886 0.84 -1.1 6,705,888 + +1.2 6,705,889 - -1.8 6,705,889 - -1.2 6,705,933 + -0.3 6,705,933 + -1.4 6,705,933 + -1.3 6,705,934 - +0.2 6,706,008 + -1.5 6,706,008 + -0.3 6,706,009 - +2.7 6,706,009 - +0.5 6,706,009 - +1.4 6,706,009 - +0.1 6,706,009 - +2.6 6,706,077 + -0.5 6,706,078 - +0.5 6,706,078 - +1.1 6,706,078 - +0.3 6,706,081 + -0.2 6,706,081 + +0.1 6,706,081 + +0.2
Or see this region's nucleotide sequence