Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4789 and Pf6N2E2_6136 are separated by 606 nucleotides Pf6N2E2_6136 and Pf6N2E2_4790 are separated by 15 nucleotides
Pf6N2E2_4789 - hypothetical protein, at 5,534,329 to 5,534,481
_4789
Pf6N2E2_6136 - tRNA-Met-CAT, at 5,535,088 to 5,535,161
_6136
Pf6N2E2_4790 - sensory box/GGDEF domain/EAL domain protein, at 5,535,177 to 5,538,920
_4790
Position (kb) 5534
5535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5533.361 kb on + strand at 5533.361 kb on + strand at 5533.361 kb on + strand at 5533.361 kb on + strand at 5533.361 kb on + strand at 5533.362 kb on - strand at 5533.362 kb on - strand at 5533.362 kb on - strand at 5533.362 kb on - strand at 5533.362 kb on - strand at 5533.409 kb on - strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.427 kb on + strand at 5533.428 kb on - strand at 5533.428 kb on - strand at 5533.428 kb on - strand at 5533.428 kb on - strand at 5533.428 kb on - strand at 5533.428 kb on - strand at 5533.459 kb on + strand at 5533.459 kb on + strand at 5533.459 kb on + strand at 5533.460 kb on - strand at 5533.460 kb on - strand at 5533.507 kb on + strand at 5533.508 kb on - strand at 5533.515 kb on + strand at 5533.515 kb on + strand at 5533.515 kb on + strand at 5533.516 kb on - strand at 5533.516 kb on - strand at 5533.516 kb on - strand at 5533.547 kb on + strand at 5533.547 kb on + strand at 5533.547 kb on + strand at 5533.547 kb on + strand at 5533.547 kb on + strand at 5533.548 kb on - strand at 5533.548 kb on - strand at 5533.548 kb on - strand at 5533.548 kb on - strand at 5533.580 kb on - strand at 5533.717 kb on + strand at 5533.717 kb on + strand at 5533.718 kb on - strand at 5533.718 kb on - strand at 5533.742 kb on + strand at 5533.742 kb on + strand at 5533.779 kb on - strand at 5533.802 kb on + strand at 5533.815 kb on + strand at 5533.862 kb on + strand at 5533.862 kb on + strand at 5533.863 kb on - strand at 5533.881 kb on + strand at 5533.882 kb on - strand at 5533.882 kb on - strand at 5533.882 kb on - strand at 5533.974 kb on + strand at 5533.987 kb on + strand at 5533.987 kb on + strand at 5533.987 kb on + strand at 5533.987 kb on + strand at 5533.987 kb on + strand at 5533.988 kb on - strand at 5533.988 kb on - strand at 5533.988 kb on - strand at 5533.988 kb on - strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.997 kb on + strand at 5533.998 kb on - strand at 5533.998 kb on - strand at 5533.998 kb on - strand at 5533.998 kb on - strand at 5533.998 kb on - strand at 5533.998 kb on - strand at 5534.001 kb on + strand at 5534.002 kb on - strand at 5534.002 kb on - strand at 5534.002 kb on - strand at 5534.045 kb on + strand at 5534.045 kb on + strand at 5534.045 kb on + strand at 5534.046 kb on - strand at 5534.046 kb on - strand at 5534.046 kb on - strand at 5534.078 kb on + strand at 5534.089 kb on + strand at 5534.090 kb on - strand at 5534.090 kb on - strand at 5534.175 kb on - strand at 5534.184 kb on - strand at 5534.184 kb on - strand at 5534.184 kb on - strand at 5534.184 kb on - strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.191 kb on + strand at 5534.192 kb on - strand at 5534.192 kb on - strand at 5534.192 kb on - strand at 5534.192 kb on - strand at 5534.192 kb on - strand at 5534.204 kb on + strand at 5534.247 kb on - strand at 5534.253 kb on - strand at 5534.361 kb on + strand, within Pf6N2E2_4789 at 5534.446 kb on + strand, within Pf6N2E2_4789 at 5534.446 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.450 kb on + strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.451 kb on - strand, within Pf6N2E2_4789 at 5534.476 kb on + strand at 5534.518 kb on - strand at 5534.518 kb on - strand at 5534.533 kb on + strand at 5534.534 kb on - strand at 5534.560 kb on + strand at 5534.560 kb on + strand at 5534.561 kb on - strand at 5534.561 kb on - strand at 5534.613 kb on + strand at 5534.613 kb on + strand at 5534.614 kb on - strand at 5534.620 kb on + strand at 5534.620 kb on + strand at 5534.621 kb on - strand at 5534.621 kb on - strand at 5534.652 kb on - strand at 5534.658 kb on + strand at 5534.668 kb on - strand at 5534.668 kb on - strand at 5534.668 kb on - strand at 5534.676 kb on + strand at 5534.676 kb on + strand at 5534.677 kb on - strand at 5534.764 kb on + strand at 5534.764 kb on + strand at 5534.764 kb on + strand at 5534.765 kb on - strand at 5534.787 kb on + strand at 5534.787 kb on + strand at 5534.787 kb on + strand at 5534.787 kb on + strand at 5534.788 kb on - strand at 5534.788 kb on - strand at 5534.788 kb on - strand at 5534.788 kb on - strand at 5534.788 kb on - strand at 5534.788 kb on - strand at 5534.827 kb on + strand at 5534.827 kb on + strand at 5534.827 kb on + strand at 5534.831 kb on + strand at 5534.831 kb on + strand at 5534.831 kb on + strand at 5534.832 kb on - strand at 5534.832 kb on - strand at 5534.884 kb on + strand at 5534.885 kb on - strand at 5534.886 kb on + strand at 5534.887 kb on - strand at 5534.913 kb on - strand at 5534.932 kb on + strand at 5534.933 kb on - strand at 5534.933 kb on - strand at 5535.068 kb on + strand at 5535.069 kb on - strand at 5535.069 kb on - strand at 5535.083 kb on + strand at 5535.167 kb on - strand at 5535.167 kb on - strand at 5535.179 kb on - strand at 5535.179 kb on - strand at 5535.181 kb on - strand at 5535.280 kb on + strand at 5535.281 kb on - strand at 5535.281 kb on - strand at 5535.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 5,533,361 + +1.3 5,533,361 + -0.4 5,533,361 + -1.5 5,533,361 + +1.9 5,533,361 + -0.1 5,533,362 - +0.1 5,533,362 - -1.0 5,533,362 - -0.8 5,533,362 - -0.9 5,533,362 - -1.6 5,533,409 - +1.0 5,533,427 + +0.5 5,533,427 + +0.6 5,533,427 + +1.2 5,533,427 + +0.7 5,533,427 + -1.6 5,533,427 + -1.0 5,533,427 + +0.2 5,533,427 + -0.9 5,533,427 + +0.3 5,533,428 - +1.9 5,533,428 - +0.3 5,533,428 - -1.2 5,533,428 - -0.4 5,533,428 - -1.4 5,533,428 - +0.4 5,533,459 + -0.2 5,533,459 + +0.6 5,533,459 + -2.0 5,533,460 - -0.2 5,533,460 - -0.1 5,533,507 + +0.2 5,533,508 - +1.0 5,533,515 + +0.8 5,533,515 + +0.6 5,533,515 + +0.7 5,533,516 - +0.3 5,533,516 - +0.2 5,533,516 - -0.6 5,533,547 + +1.7 5,533,547 + -1.8 5,533,547 + -2.5 5,533,547 + +0.8 5,533,547 + +0.3 5,533,548 - -0.2 5,533,548 - +2.4 5,533,548 - +1.7 5,533,548 - +1.5 5,533,580 - +1.2 5,533,717 + -0.8 5,533,717 + +0.1 5,533,718 - -0.9 5,533,718 - +0.5 5,533,742 + -0.7 5,533,742 + -0.1 5,533,779 - -0.4 5,533,802 + +1.1 5,533,815 + -0.3 5,533,862 + -0.4 5,533,862 + +1.2 5,533,863 - -1.0 5,533,881 + -0.9 5,533,882 - -0.0 5,533,882 - +0.9 5,533,882 - -0.0 5,533,974 + +0.2 5,533,987 + -0.7 5,533,987 + +0.8 5,533,987 + +2.2 5,533,987 + +0.5 5,533,987 + +0.4 5,533,988 - -0.5 5,533,988 - +1.0 5,533,988 - -0.9 5,533,988 - +0.1 5,533,997 + -1.0 5,533,997 + +0.7 5,533,997 + +1.1 5,533,997 + +1.5 5,533,997 + +1.7 5,533,997 + +0.3 5,533,997 + +0.7 5,533,997 + -0.5 5,533,997 + -0.5 5,533,997 + +1.0 5,533,997 + +0.2 5,533,997 + +1.7 5,533,997 + -1.7 5,533,998 - -1.2 5,533,998 - -0.7 5,533,998 - +0.6 5,533,998 - -0.2 5,533,998 - +0.8 5,533,998 - -0.4 5,534,001 + -0.9 5,534,002 - -0.7 5,534,002 - -0.8 5,534,002 - -1.0 5,534,045 + -0.1 5,534,045 + -0.3 5,534,045 + +0.0 5,534,046 - +0.7 5,534,046 - +1.0 5,534,046 - -0.6 5,534,078 + -0.9 5,534,089 + -1.5 5,534,090 - -0.0 5,534,090 - +1.3 5,534,175 - +1.5 5,534,184 - -0.1 5,534,184 - -0.6 5,534,184 - +0.0 5,534,184 - -0.0 5,534,191 + -1.4 5,534,191 + -0.1 5,534,191 + -0.6 5,534,191 + -1.3 5,534,191 + -0.0 5,534,191 + -1.0 5,534,191 + +0.4 5,534,191 + +0.6 5,534,191 + -0.9 5,534,192 - +1.0 5,534,192 - +1.7 5,534,192 - +0.6 5,534,192 - -0.0 5,534,192 - +0.3 5,534,204 + +0.5 5,534,247 - -2.5 5,534,253 - -0.1 5,534,361 + Pf6N2E2_4789 0.21 +2.0 5,534,446 + Pf6N2E2_4789 0.76 -0.6 5,534,446 + Pf6N2E2_4789 0.76 +0.6 5,534,450 + Pf6N2E2_4789 0.79 +0.6 5,534,450 + Pf6N2E2_4789 0.79 +0.4 5,534,450 + Pf6N2E2_4789 0.79 +0.9 5,534,450 + Pf6N2E2_4789 0.79 +0.7 5,534,450 + Pf6N2E2_4789 0.79 +0.9 5,534,450 + Pf6N2E2_4789 0.79 +0.2 5,534,450 + Pf6N2E2_4789 0.79 +0.5 5,534,450 + Pf6N2E2_4789 0.79 +1.1 5,534,450 + Pf6N2E2_4789 0.79 +0.1 5,534,450 + Pf6N2E2_4789 0.79 +0.6 5,534,450 + Pf6N2E2_4789 0.79 +0.5 5,534,450 + Pf6N2E2_4789 0.79 -0.8 5,534,450 + Pf6N2E2_4789 0.79 +0.1 5,534,450 + Pf6N2E2_4789 0.79 +0.8 5,534,450 + Pf6N2E2_4789 0.79 -1.2 5,534,450 + Pf6N2E2_4789 0.79 +0.2 5,534,450 + Pf6N2E2_4789 0.79 +0.2 5,534,450 + Pf6N2E2_4789 0.79 -2.0 5,534,450 + Pf6N2E2_4789 0.79 +0.1 5,534,450 + Pf6N2E2_4789 0.79 +0.4 5,534,450 + Pf6N2E2_4789 0.79 +0.9 5,534,450 + Pf6N2E2_4789 0.79 +1.5 5,534,450 + Pf6N2E2_4789 0.79 -0.2 5,534,450 + Pf6N2E2_4789 0.79 +1.0 5,534,450 + Pf6N2E2_4789 0.79 +0.2 5,534,450 + Pf6N2E2_4789 0.79 -1.9 5,534,450 + Pf6N2E2_4789 0.79 +0.3 5,534,450 + Pf6N2E2_4789 0.79 +0.6 5,534,450 + Pf6N2E2_4789 0.79 +0.6 5,534,450 + Pf6N2E2_4789 0.79 -0.0 5,534,450 + Pf6N2E2_4789 0.79 +3.1 5,534,450 + Pf6N2E2_4789 0.79 +0.4 5,534,450 + Pf6N2E2_4789 0.79 -1.6 5,534,450 + Pf6N2E2_4789 0.79 -0.2 5,534,451 - Pf6N2E2_4789 0.80 -1.7 5,534,451 - Pf6N2E2_4789 0.80 +0.6 5,534,451 - Pf6N2E2_4789 0.80 -2.3 5,534,451 - Pf6N2E2_4789 0.80 +0.7 5,534,451 - Pf6N2E2_4789 0.80 +0.0 5,534,451 - Pf6N2E2_4789 0.80 -1.9 5,534,451 - Pf6N2E2_4789 0.80 +1.6 5,534,451 - Pf6N2E2_4789 0.80 -1.6 5,534,451 - Pf6N2E2_4789 0.80 +0.8 5,534,451 - Pf6N2E2_4789 0.80 +1.0 5,534,451 - Pf6N2E2_4789 0.80 +2.1 5,534,451 - Pf6N2E2_4789 0.80 +0.4 5,534,451 - Pf6N2E2_4789 0.80 +1.3 5,534,451 - Pf6N2E2_4789 0.80 +0.8 5,534,451 - Pf6N2E2_4789 0.80 +0.4 5,534,451 - Pf6N2E2_4789 0.80 -0.2 5,534,476 + +3.5 5,534,518 - +0.0 5,534,518 - +0.1 5,534,533 + -0.3 5,534,534 - +1.0 5,534,560 + -1.5 5,534,560 + -0.2 5,534,561 - +1.1 5,534,561 - -2.0 5,534,613 + +1.3 5,534,613 + -0.1 5,534,614 - +0.8 5,534,620 + +1.1 5,534,620 + +0.0 5,534,621 - +0.5 5,534,621 - -0.5 5,534,652 - +0.7 5,534,658 + -1.8 5,534,668 - -2.0 5,534,668 - +0.7 5,534,668 - +0.7 5,534,676 + +0.1 5,534,676 + +0.3 5,534,677 - -0.9 5,534,764 + +1.1 5,534,764 + -3.2 5,534,764 + -0.6 5,534,765 - -0.4 5,534,787 + +0.9 5,534,787 + +1.0 5,534,787 + -2.2 5,534,787 + +0.0 5,534,788 - -1.3 5,534,788 - +0.9 5,534,788 - +0.9 5,534,788 - +0.3 5,534,788 - -0.1 5,534,788 - +0.4 5,534,827 + +0.3 5,534,827 + -0.9 5,534,827 + +2.1 5,534,831 + -1.4 5,534,831 + +0.3 5,534,831 + +0.6 5,534,832 - +1.4 5,534,832 - +0.5 5,534,884 + +0.0 5,534,885 - -1.4 5,534,886 + -0.1 5,534,887 - -0.6 5,534,913 - -0.5 5,534,932 + -1.7 5,534,933 - -0.3 5,534,933 - -0.8 5,535,068 + -0.0 5,535,069 - +0.1 5,535,069 - -0.7 5,535,083 + -0.2 5,535,167 - -2.3 5,535,167 - -1.3 5,535,179 - +1.2 5,535,179 - +0.4 5,535,181 - -1.7 5,535,280 + +0.5 5,535,281 - -0.3 5,535,281 - +0.6 5,535,281 - +1.0
Or see this region's nucleotide sequence