Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2601

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2600 and Pf6N2E2_2601 are separated by 82 nucleotidesPf6N2E2_2601 and Pf6N2E2_2602 are separated by 66 nucleotides Pf6N2E2_2600 - Flagellar hook-associated protein FliD, at 3,057,526 to 3,058,959 _2600 Pf6N2E2_2601 - Flagellin protein FlaG, at 3,059,042 to 3,059,413 _2601 Pf6N2E2_2602 - Flagellin protein FlaA, at 3,059,480 to 3,060,331 _2602 Position (kb) 3059 3060Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.111 kb on - strand, within Pf6N2E2_2600at 3058.112 kb on + strand, within Pf6N2E2_2600at 3058.112 kb on + strand, within Pf6N2E2_2600at 3058.112 kb on + strand, within Pf6N2E2_2600at 3058.112 kb on + strand, within Pf6N2E2_2600at 3058.112 kb on + strand, within Pf6N2E2_2600at 3058.112 kb on + strand, within Pf6N2E2_2600at 3058.113 kb on - strand, within Pf6N2E2_2600at 3058.113 kb on - strand, within Pf6N2E2_2600at 3058.113 kb on - strand, within Pf6N2E2_2600at 3058.113 kb on - strand, within Pf6N2E2_2600at 3058.113 kb on - strand, within Pf6N2E2_2600at 3058.113 kb on - strand, within Pf6N2E2_2600at 3058.224 kb on + strand, within Pf6N2E2_2600at 3058.224 kb on + strand, within Pf6N2E2_2600at 3058.224 kb on + strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.225 kb on - strand, within Pf6N2E2_2600at 3058.323 kb on + strand, within Pf6N2E2_2600at 3058.324 kb on - strand, within Pf6N2E2_2600at 3058.383 kb on + strand, within Pf6N2E2_2600at 3058.384 kb on - strand, within Pf6N2E2_2600at 3058.384 kb on - strand, within Pf6N2E2_2600at 3058.384 kb on - strand, within Pf6N2E2_2600at 3058.475 kb on + strand, within Pf6N2E2_2600at 3058.475 kb on + strand, within Pf6N2E2_2600at 3058.475 kb on + strand, within Pf6N2E2_2600at 3058.475 kb on + strand, within Pf6N2E2_2600at 3058.475 kb on + strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.476 kb on - strand, within Pf6N2E2_2600at 3058.482 kb on + strand, within Pf6N2E2_2600at 3058.482 kb on + strand, within Pf6N2E2_2600at 3058.483 kb on - strand, within Pf6N2E2_2600at 3058.508 kb on - strand, within Pf6N2E2_2600at 3058.508 kb on - strand, within Pf6N2E2_2600at 3058.528 kb on - strand, within Pf6N2E2_2600at 3058.539 kb on - strand, within Pf6N2E2_2600at 3058.545 kb on + strand, within Pf6N2E2_2600at 3058.545 kb on + strand, within Pf6N2E2_2600at 3058.580 kb on - strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.659 kb on - strand, within Pf6N2E2_2600at 3058.734 kb on + strand, within Pf6N2E2_2600at 3058.821 kb on + strandat 3058.822 kb on - strandat 3058.903 kb on - strandat 3058.928 kb on - strandat 3058.942 kb on + strandat 3059.000 kb on - strandat 3059.000 kb on - strandat 3059.000 kb on - strandat 3059.019 kb on - strandat 3059.019 kb on - strandat 3059.019 kb on - strandat 3059.087 kb on - strand, within Pf6N2E2_2601at 3059.159 kb on - strand, within Pf6N2E2_2601at 3059.165 kb on + strand, within Pf6N2E2_2601at 3059.165 kb on + strandat 3059.166 kb on - strand, within Pf6N2E2_2601at 3059.166 kb on - strand, within Pf6N2E2_2601at 3059.166 kb on - strand, within Pf6N2E2_2601at 3059.188 kb on + strand, within Pf6N2E2_2601at 3059.188 kb on + strand, within Pf6N2E2_2601at 3059.189 kb on - strand, within Pf6N2E2_2601at 3059.189 kb on - strand, within Pf6N2E2_2601at 3059.189 kb on - strand, within Pf6N2E2_2601at 3059.304 kb on - strand, within Pf6N2E2_2601at 3059.304 kb on - strand, within Pf6N2E2_2601at 3059.304 kb on - strand, within Pf6N2E2_2601at 3059.402 kb on - strandat 3059.443 kb on - strandat 3059.478 kb on + strandat 3059.478 kb on + strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.481 kb on + strandat 3059.481 kb on + strandat 3059.482 kb on - strandat 3059.482 kb on - strandat 3059.482 kb on - strandat 3059.498 kb on + strandat 3059.498 kb on + strandat 3059.499 kb on - strandat 3059.606 kb on + strand, within Pf6N2E2_2602at 3059.607 kb on - strand, within Pf6N2E2_2602at 3059.607 kb on - strand, within Pf6N2E2_2602at 3059.607 kb on - strand, within Pf6N2E2_2602at 3059.666 kb on - strand, within Pf6N2E2_2602at 3059.666 kb on - strand, within Pf6N2E2_2602at 3059.899 kb on + strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3060.059 kb on - strand, within Pf6N2E2_2602at 3060.059 kb on - strand, within Pf6N2E2_2602at 3060.059 kb on - strand, within Pf6N2E2_2602at 3060.118 kb on + strand, within Pf6N2E2_2602at 3060.118 kb on + strand, within Pf6N2E2_2602at 3060.119 kb on - strand, within Pf6N2E2_2602at 3060.119 kb on - strand, within Pf6N2E2_2602at 3060.119 kb on - strand, within Pf6N2E2_2602at 3060.172 kb on + strand, within Pf6N2E2_2602at 3060.173 kb on - strand, within Pf6N2E2_2602at 3060.317 kb on + strandat 3060.323 kb on + strandat 3060.393 kb on + strandat 3060.394 kb on - strandat 3060.407 kb on - strandat 3060.409 kb on + strandat 3060.409 kb on + strandat 3060.409 kb on + strandat 3060.410 kb on - strandat 3060.410 kb on - strandat 3060.410 kb on - strandat 3060.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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3,058,111 - Pf6N2E2_2600 0.41 -1.5
3,058,111 - Pf6N2E2_2600 0.41 -0.5
3,058,111 - Pf6N2E2_2600 0.41 -0.1
3,058,111 - Pf6N2E2_2600 0.41 -2.3
3,058,111 - Pf6N2E2_2600 0.41 -2.2
3,058,111 - Pf6N2E2_2600 0.41 -2.3
3,058,111 - Pf6N2E2_2600 0.41 -1.5
3,058,111 - Pf6N2E2_2600 0.41 -1.6
3,058,111 - Pf6N2E2_2600 0.41 -1.4
3,058,111 - Pf6N2E2_2600 0.41 -0.3
3,058,112 + Pf6N2E2_2600 0.41 -2.7
3,058,112 + Pf6N2E2_2600 0.41 -2.9
3,058,112 + Pf6N2E2_2600 0.41 -1.0
3,058,112 + Pf6N2E2_2600 0.41 -1.4
3,058,112 + Pf6N2E2_2600 0.41 +0.2
3,058,112 + Pf6N2E2_2600 0.41 -1.2
3,058,113 - Pf6N2E2_2600 0.41 -0.1
3,058,113 - Pf6N2E2_2600 0.41 -2.3
3,058,113 - Pf6N2E2_2600 0.41 -1.7
3,058,113 - Pf6N2E2_2600 0.41 -1.5
3,058,113 - Pf6N2E2_2600 0.41 +0.5
3,058,113 - Pf6N2E2_2600 0.41 -3.6
3,058,224 + Pf6N2E2_2600 0.49 +1.7
3,058,224 + Pf6N2E2_2600 0.49 -0.3
3,058,224 + Pf6N2E2_2600 0.49 -1.6
3,058,225 - Pf6N2E2_2600 0.49 +0.5
3,058,225 - Pf6N2E2_2600 0.49 -0.5
3,058,225 - Pf6N2E2_2600 0.49 -0.9
3,058,225 - Pf6N2E2_2600 0.49 -2.1
3,058,225 - Pf6N2E2_2600 0.49 -2.4
3,058,225 - Pf6N2E2_2600 0.49 -1.6
3,058,225 - Pf6N2E2_2600 0.49 -2.7
3,058,225 - Pf6N2E2_2600 0.49 -2.9
3,058,323 + Pf6N2E2_2600 0.56 -0.9
3,058,324 - Pf6N2E2_2600 0.56 -0.7
3,058,383 + Pf6N2E2_2600 0.60 -0.7
3,058,384 - Pf6N2E2_2600 0.60 -1.1
3,058,384 - Pf6N2E2_2600 0.60 -1.5
3,058,384 - Pf6N2E2_2600 0.60 -1.0
3,058,475 + Pf6N2E2_2600 0.66 -1.8
3,058,475 + Pf6N2E2_2600 0.66 -0.9
3,058,475 + Pf6N2E2_2600 0.66 -2.0
3,058,475 + Pf6N2E2_2600 0.66 -2.5
3,058,475 + Pf6N2E2_2600 0.66 -1.7
3,058,476 - Pf6N2E2_2600 0.66 -1.3
3,058,476 - Pf6N2E2_2600 0.66 +0.0
3,058,476 - Pf6N2E2_2600 0.66 -2.4
3,058,476 - Pf6N2E2_2600 0.66 -1.7
3,058,476 - Pf6N2E2_2600 0.66 -2.1
3,058,476 - Pf6N2E2_2600 0.66 -0.1
3,058,476 - Pf6N2E2_2600 0.66 -0.9
3,058,476 - Pf6N2E2_2600 0.66 -0.4
3,058,482 + Pf6N2E2_2600 0.67 -2.2
3,058,482 + Pf6N2E2_2600 0.67 -2.6
3,058,483 - Pf6N2E2_2600 0.67 -3.3
3,058,508 - Pf6N2E2_2600 0.68 +1.0
3,058,508 - Pf6N2E2_2600 0.68 -1.2
3,058,528 - Pf6N2E2_2600 0.70 -1.9
3,058,539 - Pf6N2E2_2600 0.71 -2.2
3,058,545 + Pf6N2E2_2600 0.71 -2.7
3,058,545 + Pf6N2E2_2600 0.71 -1.5
3,058,580 - Pf6N2E2_2600 0.74 -1.2
3,058,658 + Pf6N2E2_2600 0.79 -0.2
3,058,658 + Pf6N2E2_2600 0.79 -2.6
3,058,658 + Pf6N2E2_2600 0.79 -2.2
3,058,658 + Pf6N2E2_2600 0.79 -2.6
3,058,659 - Pf6N2E2_2600 0.79 -2.5
3,058,734 + Pf6N2E2_2600 0.84 -1.4
3,058,821 + -2.1
3,058,822 - -3.3
3,058,903 - -1.3
3,058,928 - -3.5
3,058,942 + -3.7
3,059,000 - +2.3
3,059,000 - +1.0
3,059,000 - -0.1
3,059,019 - +1.2
3,059,019 - +0.0
3,059,019 - +2.4
3,059,087 - Pf6N2E2_2601 0.12 +1.4
3,059,159 - Pf6N2E2_2601 0.31 +0.4
3,059,165 + Pf6N2E2_2601 0.33 +5.3
3,059,165 + +5.0
3,059,166 - Pf6N2E2_2601 0.33 -0.1
3,059,166 - Pf6N2E2_2601 0.33 +0.0
3,059,166 - Pf6N2E2_2601 0.33 +3.0
3,059,188 + Pf6N2E2_2601 0.39 +5.1
3,059,188 + Pf6N2E2_2601 0.39 +4.8
3,059,189 - Pf6N2E2_2601 0.40 +3.6
3,059,189 - Pf6N2E2_2601 0.40 +1.6
3,059,189 - Pf6N2E2_2601 0.40 +3.8
3,059,304 - Pf6N2E2_2601 0.70 +1.3
3,059,304 - Pf6N2E2_2601 0.70 +1.4
3,059,304 - Pf6N2E2_2601 0.70 -2.0
3,059,402 - +0.7
3,059,443 - +2.6
3,059,478 + +2.5
3,059,478 + -0.4
3,059,479 - +2.0
3,059,479 - +3.4
3,059,479 - +2.2
3,059,479 - +3.3
3,059,479 - +3.0
3,059,479 - +2.4
3,059,481 + +4.9
3,059,481 + +2.1
3,059,482 - +4.1
3,059,482 - +3.1
3,059,482 - +2.4
3,059,498 + -1.8
3,059,498 + -3.5
3,059,499 - -1.8
3,059,606 + Pf6N2E2_2602 0.15 -1.1
3,059,607 - Pf6N2E2_2602 0.15 -3.3
3,059,607 - Pf6N2E2_2602 0.15 -2.9
3,059,607 - Pf6N2E2_2602 0.15 -3.2
3,059,666 - Pf6N2E2_2602 0.22 -1.7
3,059,666 - Pf6N2E2_2602 0.22 -2.2
3,059,899 + Pf6N2E2_2602 0.49 -1.9
3,059,900 - Pf6N2E2_2602 0.49 +0.0
3,059,900 - Pf6N2E2_2602 0.49 -3.3
3,059,900 - Pf6N2E2_2602 0.49 -2.5
3,059,900 - Pf6N2E2_2602 0.49 -3.8
3,059,900 - Pf6N2E2_2602 0.49 -1.3
3,059,900 - Pf6N2E2_2602 0.49 -3.0
3,060,059 - Pf6N2E2_2602 0.68 -1.6
3,060,059 - Pf6N2E2_2602 0.68 -3.4
3,060,059 - Pf6N2E2_2602 0.68 -2.2
3,060,118 + Pf6N2E2_2602 0.75 -1.5
3,060,118 + Pf6N2E2_2602 0.75 -1.3
3,060,119 - Pf6N2E2_2602 0.75 -2.9
3,060,119 - Pf6N2E2_2602 0.75 -1.4
3,060,119 - Pf6N2E2_2602 0.75 -1.5
3,060,172 + Pf6N2E2_2602 0.81 -0.7
3,060,173 - Pf6N2E2_2602 0.81 -0.9
3,060,317 + -1.8
3,060,323 + +1.0
3,060,393 + -3.6
3,060,394 - -3.0
3,060,407 - +0.2
3,060,409 + -1.9
3,060,409 + -2.8
3,060,409 + -0.1
3,060,410 - +1.0
3,060,410 - -1.7
3,060,410 - +1.2
3,060,413 + -2.0

Or see this region's nucleotide sequence