Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2600

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,056,526	+				-0.4
3,056,526	+				-1.7
3,056,526	+				-1.9
3,056,527	-				-1.3
3,056,561	-				-3.5
3,056,573	-				-1.6
3,056,573	-				-2.6
3,056,573	-				-0.4
3,056,573	-				-1.6
3,056,573	-				-1.5
3,056,617	-				-2.9
3,056,625	-				-1.4
3,056,625	-				-1.0
3,056,627	+				-2.5
3,056,627	+				-1.9
3,056,627	+				+0.2
3,056,627	+				-0.1
3,056,628	-				-0.9
3,056,628	-				-3.3
3,056,628	-				+6.3
3,056,631	+				-3.4
3,056,632	-				-1.0
3,056,632	-				-2.3
3,056,632	-				-3.1
3,056,682	-				+3.7
3,056,708	-				-1.8
3,057,001	-				+2.0
3,057,001	-				+0.6
3,057,126	+		Pf6N2E2_2599	0.32	-2.2
3,057,126	+		Pf6N2E2_2599	0.32	-0.5
3,057,126	+		Pf6N2E2_2599	0.32	-2.0
3,057,126	+		Pf6N2E2_2599	0.32	-1.1
3,057,126	+		Pf6N2E2_2599	0.32	-1.9
3,057,126	+		Pf6N2E2_2599	0.32	-1.7
3,057,127	-		Pf6N2E2_2599	0.32	-2.0
3,057,127	-		Pf6N2E2_2599	0.32	-2.2
3,057,127	-		Pf6N2E2_2599	0.32	-2.4
3,057,127	-		Pf6N2E2_2599	0.32	-1.6
3,057,127	-		Pf6N2E2_2599	0.32	-0.2
3,057,133	-		Pf6N2E2_2599	0.34	-2.9
3,057,133	-		Pf6N2E2_2599	0.34	-2.1
3,057,133	-		Pf6N2E2_2599	0.34	+0.3
3,057,133	-		Pf6N2E2_2599	0.34	-2.6
3,057,227	+		Pf6N2E2_2599	0.58	-1.2
3,057,244	+		Pf6N2E2_2599	0.62	-1.7
3,057,247	-		Pf6N2E2_2599	0.63	-1.7
3,057,381	-				-1.0
3,057,399	+				-1.5
3,057,399	+				-0.4
3,057,399	+				-2.0
3,057,399	+				-3.3
3,057,399	+				-2.9
3,057,400	-				+0.4
3,057,400	-				+3.3
3,057,424	+				-1.1
3,057,424	+				-2.3
3,057,424	+				-1.6
3,057,424	+				-0.3
3,057,425	-				-0.9
3,057,427	-				+0.9
3,057,435	+				-0.4
3,057,459	+				+1.6
3,057,460	-				+3.4
3,058,111	-		Pf6N2E2_2600	0.41	-1.5
3,058,111	-		Pf6N2E2_2600	0.41	-0.5
3,058,111	-		Pf6N2E2_2600	0.41	-0.1
3,058,111	-		Pf6N2E2_2600	0.41	-2.3
3,058,111	-		Pf6N2E2_2600	0.41	-2.2
3,058,111	-		Pf6N2E2_2600	0.41	-2.3
3,058,111	-		Pf6N2E2_2600	0.41	-1.5
3,058,111	-		Pf6N2E2_2600	0.41	-1.6
3,058,111	-		Pf6N2E2_2600	0.41	-1.4
3,058,111	-		Pf6N2E2_2600	0.41	-0.3
3,058,112	+		Pf6N2E2_2600	0.41	-2.7
3,058,112	+		Pf6N2E2_2600	0.41	-2.9
3,058,112	+		Pf6N2E2_2600	0.41	-1.0
3,058,112	+		Pf6N2E2_2600	0.41	-1.4
3,058,112	+		Pf6N2E2_2600	0.41	+0.2
3,058,112	+		Pf6N2E2_2600	0.41	-1.2
3,058,113	-		Pf6N2E2_2600	0.41	-0.1
3,058,113	-		Pf6N2E2_2600	0.41	-2.3
3,058,113	-		Pf6N2E2_2600	0.41	-1.7
3,058,113	-		Pf6N2E2_2600	0.41	-1.5
3,058,113	-		Pf6N2E2_2600	0.41	+0.5
3,058,113	-		Pf6N2E2_2600	0.41	-3.6
3,058,224	+		Pf6N2E2_2600	0.49	+1.7
3,058,224	+		Pf6N2E2_2600	0.49	-0.3
3,058,224	+		Pf6N2E2_2600	0.49	-1.6
3,058,225	-		Pf6N2E2_2600	0.49	+0.5
3,058,225	-		Pf6N2E2_2600	0.49	-0.5
3,058,225	-		Pf6N2E2_2600	0.49	-0.9
3,058,225	-		Pf6N2E2_2600	0.49	-2.1
3,058,225	-		Pf6N2E2_2600	0.49	-2.4
3,058,225	-		Pf6N2E2_2600	0.49	-1.6
3,058,225	-		Pf6N2E2_2600	0.49	-2.7
3,058,225	-		Pf6N2E2_2600	0.49	-2.9
3,058,323	+		Pf6N2E2_2600	0.56	-0.9
3,058,324	-		Pf6N2E2_2600	0.56	-0.7
3,058,383	+		Pf6N2E2_2600	0.60	-0.7
3,058,384	-		Pf6N2E2_2600	0.60	-1.1
3,058,384	-		Pf6N2E2_2600	0.60	-1.5
3,058,384	-		Pf6N2E2_2600	0.60	-1.0
3,058,475	+		Pf6N2E2_2600	0.66	-1.8
3,058,475	+		Pf6N2E2_2600	0.66	-0.9
3,058,475	+		Pf6N2E2_2600	0.66	-2.0
3,058,475	+		Pf6N2E2_2600	0.66	-2.5
3,058,475	+		Pf6N2E2_2600	0.66	-1.7
3,058,476	-		Pf6N2E2_2600	0.66	-1.3
3,058,476	-		Pf6N2E2_2600	0.66	+0.0
3,058,476	-		Pf6N2E2_2600	0.66	-2.4
3,058,476	-		Pf6N2E2_2600	0.66	-1.7
3,058,476	-		Pf6N2E2_2600	0.66	-2.1
3,058,476	-		Pf6N2E2_2600	0.66	-0.1
3,058,476	-		Pf6N2E2_2600	0.66	-0.9
3,058,476	-		Pf6N2E2_2600	0.66	-0.4
3,058,482	+		Pf6N2E2_2600	0.67	-2.2
3,058,482	+		Pf6N2E2_2600	0.67	-2.6
3,058,483	-		Pf6N2E2_2600	0.67	-3.3
3,058,508	-		Pf6N2E2_2600	0.68	+1.0
3,058,508	-		Pf6N2E2_2600	0.68	-1.2
3,058,528	-		Pf6N2E2_2600	0.70	-1.9
3,058,539	-		Pf6N2E2_2600	0.71	-2.2
3,058,545	+		Pf6N2E2_2600	0.71	-2.7
3,058,545	+		Pf6N2E2_2600	0.71	-1.5
3,058,580	-		Pf6N2E2_2600	0.74	-1.2
3,058,658	+		Pf6N2E2_2600	0.79	-0.2
3,058,658	+		Pf6N2E2_2600	0.79	-2.6
3,058,658	+		Pf6N2E2_2600	0.79	-2.2
3,058,658	+		Pf6N2E2_2600	0.79	-2.6
3,058,659	-		Pf6N2E2_2600	0.79	-2.5
3,058,734	+		Pf6N2E2_2600	0.84	-1.4
3,058,821	+				-2.1
3,058,822	-				-3.3
3,058,903	-				-1.3
3,058,928	-				-3.5
3,058,942	+				-3.7
3,059,000	-				+2.3
3,059,000	-				+1.0
3,059,000	-				-0.1
3,059,019	-				+1.2
3,059,019	-				+0.0
3,059,019	-				+2.4
3,059,087	-		Pf6N2E2_2601	0.12	+1.4
3,059,159	-		Pf6N2E2_2601	0.31	+0.4
3,059,165	+		Pf6N2E2_2601	0.33	+5.3
3,059,165	+				+5.0
3,059,166	-		Pf6N2E2_2601	0.33	-0.1
3,059,166	-		Pf6N2E2_2601	0.33	+0.0
3,059,166	-		Pf6N2E2_2601	0.33	+3.0
3,059,188	+		Pf6N2E2_2601	0.39	+5.1
3,059,188	+		Pf6N2E2_2601	0.39	+4.8
3,059,189	-		Pf6N2E2_2601	0.40	+3.6
3,059,189	-		Pf6N2E2_2601	0.40	+1.6
3,059,189	-		Pf6N2E2_2601	0.40	+3.8
3,059,304	-		Pf6N2E2_2601	0.70	+1.3
3,059,304	-		Pf6N2E2_2601	0.70	+1.4
3,059,304	-		Pf6N2E2_2601	0.70	-2.0
3,059,402	-				+0.7
3,059,443	-				+2.6
3,059,478	+				+2.5
3,059,478	+				-0.4
3,059,479	-				+2.0
3,059,479	-				+3.4
3,059,479	-				+2.2
3,059,479	-				+3.3
3,059,479	-				+3.0
3,059,479	-				+2.4
3,059,481	+				+4.9
3,059,481	+				+2.1
3,059,482	-				+4.1
3,059,482	-				+3.1
3,059,482	-				+2.4
3,059,498	+				-1.8
3,059,498	+				-3.5
3,059,499	-				-1.8
3,059,606	+		Pf6N2E2_2602	0.15	-1.1
3,059,607	-		Pf6N2E2_2602	0.15	-3.3
3,059,607	-		Pf6N2E2_2602	0.15	-2.9
3,059,607	-		Pf6N2E2_2602	0.15	-3.2
3,059,666	-		Pf6N2E2_2602	0.22	-1.7
3,059,666	-		Pf6N2E2_2602	0.22	-2.2
3,059,899	+		Pf6N2E2_2602	0.49	-1.9
3,059,900	-		Pf6N2E2_2602	0.49	+0.0
3,059,900	-		Pf6N2E2_2602	0.49	-3.3
3,059,900	-		Pf6N2E2_2602	0.49	-2.5
3,059,900	-		Pf6N2E2_2602	0.49	-3.8
3,059,900	-		Pf6N2E2_2602	0.49	-1.3
3,059,900	-		Pf6N2E2_2602	0.49	-3.0