Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2051

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2049 and Pf6N2E2_2050 are separated by 25 nucleotidesPf6N2E2_2050 and Pf6N2E2_2051 overlap by 4 nucleotidesPf6N2E2_2051 and Pf6N2E2_2052 are separated by 9 nucleotidesPf6N2E2_2052 and Pf6N2E2_2053 are separated by 54 nucleotides Pf6N2E2_2049 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 2,441,174 to 2,441,560 _2049 Pf6N2E2_2050 - ABC transporter for D-Glucosamine, putative ATPase component (from data), at 2,441,586 to 2,442,377 _2050 Pf6N2E2_2051 - ABC transporter for D-Glucosamine Hydrochloride, permease component 1 (from data), at 2,442,374 to 2,443,036 _2051 Pf6N2E2_2052 - ABC transporter for D-Glucosamine Hydrochloride, permease component 2 (from data), at 2,443,046 to 2,443,708 _2052 Pf6N2E2_2053 - ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data), at 2,443,763 to 2,444,611 _2053 Position (kb) 2442 2443 2444Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2441.582 kb on - strandat 2442.311 kb on - strandat 2442.426 kb on + strandat 2442.426 kb on + strandat 2442.427 kb on - strandat 2442.462 kb on + strand, within Pf6N2E2_2051at 2442.462 kb on + strand, within Pf6N2E2_2051at 2442.463 kb on - strand, within Pf6N2E2_2051at 2442.463 kb on - strand, within Pf6N2E2_2051at 2442.624 kb on + strand, within Pf6N2E2_2051at 2442.624 kb on + strand, within Pf6N2E2_2051at 2442.640 kb on - strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.855 kb on + strand, within Pf6N2E2_2051at 2442.855 kb on + strand, within Pf6N2E2_2051at 2442.855 kb on + strand, within Pf6N2E2_2051at 2442.856 kb on - strand, within Pf6N2E2_2051at 2442.856 kb on - strand, within Pf6N2E2_2051at 2442.891 kb on + strand, within Pf6N2E2_2051at 2442.891 kb on + strand, within Pf6N2E2_2051at 2442.892 kb on - strand, within Pf6N2E2_2051at 2443.004 kb on + strandat 2443.032 kb on + strandat 2443.032 kb on + strandat 2443.033 kb on - strandat 2443.033 kb on - strandat 2443.033 kb on - strandat 2443.101 kb on + strandat 2443.102 kb on - strandat 2443.102 kb on - strandat 2443.116 kb on + strand, within Pf6N2E2_2052at 2443.116 kb on + strand, within Pf6N2E2_2052at 2443.116 kb on + strand, within Pf6N2E2_2052at 2443.117 kb on - strand, within Pf6N2E2_2052at 2443.117 kb on - strand, within Pf6N2E2_2052at 2443.117 kb on - strand, within Pf6N2E2_2052at 2443.182 kb on + strand, within Pf6N2E2_2052at 2443.185 kb on + strand, within Pf6N2E2_2052at 2443.185 kb on + strand, within Pf6N2E2_2052at 2443.186 kb on - strand, within Pf6N2E2_2052at 2443.186 kb on - strand, within Pf6N2E2_2052at 2443.186 kb on - strand, within Pf6N2E2_2052at 2443.268 kb on + strand, within Pf6N2E2_2052at 2443.269 kb on - strand, within Pf6N2E2_2052at 2443.269 kb on - strand, within Pf6N2E2_2052at 2443.300 kb on - strand, within Pf6N2E2_2052at 2443.399 kb on - strand, within Pf6N2E2_2052at 2443.399 kb on - strand, within Pf6N2E2_2052at 2443.399 kb on - strand, within Pf6N2E2_2052at 2443.479 kb on + strand, within Pf6N2E2_2052at 2443.510 kb on + strand, within Pf6N2E2_2052at 2443.511 kb on - strand, within Pf6N2E2_2052at 2443.531 kb on - strand, within Pf6N2E2_2052at 2443.531 kb on - strand, within Pf6N2E2_2052at 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.879 kb on + strand, within Pf6N2E2_2053at 2443.879 kb on + strand, within Pf6N2E2_2053at 2443.879 kb on + strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.932 kb on + strand, within Pf6N2E2_2053at 2443.953 kb on + strand, within Pf6N2E2_2053at 2443.995 kb on + strand, within Pf6N2E2_2053at 2443.995 kb on + strand, within Pf6N2E2_2053at 2443.995 kb on + strand, within Pf6N2E2_2053at 2443.996 kb on - strand, within Pf6N2E2_2053at 2443.996 kb on - strand, within Pf6N2E2_2053at 2443.996 kb on - strand, within Pf6N2E2_2053

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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2,441,582 - -0.4
2,442,311 - -1.7
2,442,426 + +0.8
2,442,426 + -2.8
2,442,427 - -0.5
2,442,462 + Pf6N2E2_2051 0.13 -1.0
2,442,462 + Pf6N2E2_2051 0.13 -1.0
2,442,463 - Pf6N2E2_2051 0.13 -1.9
2,442,463 - Pf6N2E2_2051 0.13 -2.0
2,442,624 + Pf6N2E2_2051 0.38 +0.4
2,442,624 + Pf6N2E2_2051 0.38 +1.6
2,442,640 - Pf6N2E2_2051 0.40 +1.3
2,442,801 + Pf6N2E2_2051 0.64 -0.2
2,442,801 + Pf6N2E2_2051 0.64 +1.5
2,442,801 + Pf6N2E2_2051 0.64 +1.7
2,442,801 + Pf6N2E2_2051 0.64 +0.7
2,442,801 + Pf6N2E2_2051 0.64 -0.0
2,442,801 + Pf6N2E2_2051 0.64 +1.0
2,442,801 + Pf6N2E2_2051 0.64 -1.6
2,442,802 - Pf6N2E2_2051 0.65 +0.9
2,442,802 - Pf6N2E2_2051 0.65 -0.6
2,442,802 - Pf6N2E2_2051 0.65 +0.9
2,442,802 - Pf6N2E2_2051 0.65 +1.3
2,442,802 - Pf6N2E2_2051 0.65 +0.6
2,442,855 + Pf6N2E2_2051 0.73 +2.2
2,442,855 + Pf6N2E2_2051 0.73 -1.2
2,442,855 + Pf6N2E2_2051 0.73 +0.3
2,442,856 - Pf6N2E2_2051 0.73 +0.4
2,442,856 - Pf6N2E2_2051 0.73 -0.9
2,442,891 + Pf6N2E2_2051 0.78 +0.8
2,442,891 + Pf6N2E2_2051 0.78 +1.6
2,442,892 - Pf6N2E2_2051 0.78 -1.3
2,443,004 + +0.2
2,443,032 + +0.8
2,443,032 + -1.7
2,443,033 - +0.3
2,443,033 - +1.0
2,443,033 - +0.6
2,443,101 + +0.2
2,443,102 - -0.9
2,443,102 - -1.3
2,443,116 + Pf6N2E2_2052 0.11 -0.4
2,443,116 + Pf6N2E2_2052 0.11 -1.8
2,443,116 + Pf6N2E2_2052 0.11 +0.1
2,443,117 - Pf6N2E2_2052 0.11 -0.8
2,443,117 - Pf6N2E2_2052 0.11 +1.0
2,443,117 - Pf6N2E2_2052 0.11 -0.3
2,443,182 + Pf6N2E2_2052 0.21 -0.0
2,443,185 + Pf6N2E2_2052 0.21 +0.7
2,443,185 + Pf6N2E2_2052 0.21 +0.3
2,443,186 - Pf6N2E2_2052 0.21 -0.4
2,443,186 - Pf6N2E2_2052 0.21 -0.4
2,443,186 - Pf6N2E2_2052 0.21 +0.3
2,443,268 + Pf6N2E2_2052 0.33 +0.2
2,443,269 - Pf6N2E2_2052 0.34 -0.0
2,443,269 - Pf6N2E2_2052 0.34 +0.8
2,443,300 - Pf6N2E2_2052 0.38 -0.7
2,443,399 - Pf6N2E2_2052 0.53 -0.1
2,443,399 - Pf6N2E2_2052 0.53 +0.0
2,443,399 - Pf6N2E2_2052 0.53 +0.4
2,443,479 + Pf6N2E2_2052 0.65 -1.3
2,443,510 + Pf6N2E2_2052 0.70 -0.5
2,443,511 - Pf6N2E2_2052 0.70 -1.0
2,443,531 - Pf6N2E2_2052 0.73 +0.7
2,443,531 - Pf6N2E2_2052 0.73 -0.9
2,443,839 + -1.3
2,443,839 + +0.5
2,443,839 + +1.2
2,443,839 + +0.2
2,443,839 + -1.0
2,443,839 + -0.7
2,443,839 + -0.3
2,443,839 + -1.4
2,443,840 - -1.2
2,443,840 - +0.3
2,443,840 - -1.2
2,443,840 - -0.4
2,443,840 - -0.4
2,443,879 + Pf6N2E2_2053 0.14 -0.1
2,443,879 + Pf6N2E2_2053 0.14 -0.2
2,443,879 + Pf6N2E2_2053 0.14 -0.6
2,443,880 - Pf6N2E2_2053 0.14 +0.4
2,443,880 - Pf6N2E2_2053 0.14 -0.6
2,443,880 - Pf6N2E2_2053 0.14 +1.1
2,443,880 - Pf6N2E2_2053 0.14 +0.1
2,443,932 + Pf6N2E2_2053 0.20 +0.8
2,443,953 + Pf6N2E2_2053 0.22 +1.6
2,443,995 + Pf6N2E2_2053 0.27 +1.9
2,443,995 + Pf6N2E2_2053 0.27 -0.9
2,443,995 + Pf6N2E2_2053 0.27 +0.3
2,443,996 - Pf6N2E2_2053 0.27 -0.2
2,443,996 - Pf6N2E2_2053 0.27 -0.5
2,443,996 - Pf6N2E2_2053 0.27 +0.2

Or see this region's nucleotide sequence