Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_4154 and Ga0059261_4155 overlap by 2 nucleotides Ga0059261_4155 and Ga0059261_4156 are separated by 0 nucleotides Ga0059261_4156 and Ga0059261_4157 are separated by 60 nucleotides
Ga0059261_4154: Ga0059261_4154 - MiaB-like tRNA modifying enzyme, at 4,306,535 to 4,307,785
_4154
Ga0059261_4155: Ga0059261_4155 - Uncharacterized protein conserved in bacteria, at 4,307,784 to 4,308,362
_4155
Ga0059261_4156: Ga0059261_4156 - Dioxygenase, at 4,308,363 to 4,309,037
_4156
Ga0059261_4157: Ga0059261_4157 - diguanylate cyclase (GGDEF) domain, at 4,309,098 to 4,310,741
_4157
Position (kb)
4307
4308
4309 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4306.816 kb on + strand, within Ga0059261_4154 at 4306.816 kb on + strand, within Ga0059261_4154 at 4306.817 kb on - strand, within Ga0059261_4154 at 4306.817 kb on - strand, within Ga0059261_4154 at 4306.818 kb on + strand, within Ga0059261_4154 at 4306.826 kb on + strand, within Ga0059261_4154 at 4306.828 kb on + strand, within Ga0059261_4154 at 4306.828 kb on + strand, within Ga0059261_4154 at 4306.829 kb on - strand, within Ga0059261_4154 at 4306.870 kb on + strand, within Ga0059261_4154 at 4306.870 kb on + strand, within Ga0059261_4154 at 4306.870 kb on + strand, within Ga0059261_4154 at 4307.208 kb on + strand, within Ga0059261_4154 at 4307.208 kb on + strand, within Ga0059261_4154 at 4307.208 kb on + strand, within Ga0059261_4154 at 4307.208 kb on + strand, within Ga0059261_4154 at 4307.208 kb on + strand, within Ga0059261_4154 at 4307.208 kb on + strand, within Ga0059261_4154 at 4307.209 kb on - strand, within Ga0059261_4154 at 4307.209 kb on - strand, within Ga0059261_4154 at 4307.209 kb on - strand, within Ga0059261_4154 at 4307.659 kb on + strand, within Ga0059261_4154 at 4307.659 kb on + strand, within Ga0059261_4154 at 4307.659 kb on + strand, within Ga0059261_4154 at 4307.660 kb on - strand, within Ga0059261_4154 at 4307.660 kb on - strand, within Ga0059261_4154 at 4307.660 kb on - strand, within Ga0059261_4154 at 4307.660 kb on - strand, within Ga0059261_4154 at 4307.660 kb on - strand, within Ga0059261_4154 at 4307.699 kb on + strand at 4307.699 kb on + strand at 4307.700 kb on - strand at 4307.700 kb on - strand at 4307.700 kb on - strand at 4307.700 kb on - strand at 4307.756 kb on + strand at 4307.756 kb on + strand at 4307.756 kb on + strand at 4307.757 kb on - strand at 4307.757 kb on - strand at 4307.757 kb on - strand at 4307.757 kb on - strand at 4307.757 kb on - strand at 4307.797 kb on + strand at 4307.797 kb on + strand at 4307.797 kb on + strand at 4307.797 kb on + strand at 4307.798 kb on - strand at 4308.054 kb on + strand, within Ga0059261_4155 at 4308.054 kb on + strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.055 kb on - strand, within Ga0059261_4155 at 4308.147 kb on + strand, within Ga0059261_4155 at 4308.147 kb on + strand, within Ga0059261_4155 at 4308.148 kb on - strand, within Ga0059261_4155 at 4308.148 kb on - strand, within Ga0059261_4155 at 4308.148 kb on - strand, within Ga0059261_4155 at 4308.148 kb on - strand, within Ga0059261_4155 at 4308.148 kb on - strand, within Ga0059261_4155 at 4308.237 kb on + strand, within Ga0059261_4155 at 4308.237 kb on + strand, within Ga0059261_4155 at 4308.237 kb on + strand, within Ga0059261_4155 at 4308.238 kb on - strand, within Ga0059261_4155 at 4308.291 kb on - strand, within Ga0059261_4155 at 4308.333 kb on + strand at 4308.333 kb on + strand at 4308.389 kb on + strand at 4308.475 kb on + strand, within Ga0059261_4156 at 4308.476 kb on - strand, within Ga0059261_4156 at 4308.476 kb on - strand, within Ga0059261_4156 at 4308.521 kb on + strand, within Ga0059261_4156 at 4308.522 kb on - strand, within Ga0059261_4156 at 4308.522 kb on - strand at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.523 kb on + strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.524 kb on - strand, within Ga0059261_4156 at 4308.526 kb on + strand, within Ga0059261_4156 at 4308.527 kb on - strand, within Ga0059261_4156 at 4308.527 kb on - strand, within Ga0059261_4156 at 4308.527 kb on - strand, within Ga0059261_4156 at 4308.617 kb on + strand, within Ga0059261_4156 at 4308.617 kb on + strand, within Ga0059261_4156 at 4308.617 kb on + strand, within Ga0059261_4156 at 4308.617 kb on + strand, within Ga0059261_4156 at 4308.617 kb on + strand, within Ga0059261_4156 at 4308.617 kb on + strand, within Ga0059261_4156 at 4308.617 kb on + strand, within Ga0059261_4156 at 4308.618 kb on - strand, within Ga0059261_4156 at 4308.618 kb on - strand, within Ga0059261_4156 at 4308.620 kb on - strand, within Ga0059261_4156 at 4308.620 kb on - strand, within Ga0059261_4156 at 4308.620 kb on - strand, within Ga0059261_4156 at 4308.704 kb on - strand, within Ga0059261_4156 at 4308.733 kb on + strand, within Ga0059261_4156 at 4308.733 kb on + strand, within Ga0059261_4156 at 4308.734 kb on - strand, within Ga0059261_4156 at 4308.734 kb on - strand, within Ga0059261_4156 at 4308.734 kb on - strand, within Ga0059261_4156 at 4308.867 kb on + strand, within Ga0059261_4156 at 4308.868 kb on - strand, within Ga0059261_4156 at 4308.892 kb on + strand, within Ga0059261_4156 at 4308.892 kb on + strand, within Ga0059261_4156 at 4308.892 kb on + strand, within Ga0059261_4156 at 4308.892 kb on - strand, within Ga0059261_4156 at 4308.893 kb on - strand, within Ga0059261_4156 at 4308.893 kb on - strand, within Ga0059261_4156 at 4308.893 kb on - strand, within Ga0059261_4156 at 4308.893 kb on - strand, within Ga0059261_4156 at 4309.011 kb on + strand at 4309.011 kb on + strand at 4309.011 kb on + strand at 4309.011 kb on + strand at 4309.012 kb on - strand at 4309.012 kb on - strand at 4309.067 kb on + strand at 4309.068 kb on - strand at 4309.068 kb on - strand at 4309.068 kb on - strand at 4309.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 4,306,816 + Ga0059261_4154 0.22 +1.3 4,306,816 + Ga0059261_4154 0.22 +0.6 4,306,817 - Ga0059261_4154 0.23 -0.1 4,306,817 - Ga0059261_4154 0.23 -0.1 4,306,818 + Ga0059261_4154 0.23 -0.1 4,306,826 + Ga0059261_4154 0.23 -0.1 4,306,828 + Ga0059261_4154 0.23 -0.9 4,306,828 + Ga0059261_4154 0.23 +0.4 4,306,829 - Ga0059261_4154 0.24 -1.8 4,306,870 + Ga0059261_4154 0.27 -0.7 4,306,870 + Ga0059261_4154 0.27 -1.1 4,306,870 + Ga0059261_4154 0.27 +0.3 4,307,208 + Ga0059261_4154 0.54 +1.1 4,307,208 + Ga0059261_4154 0.54 -0.5 4,307,208 + Ga0059261_4154 0.54 -0.2 4,307,208 + Ga0059261_4154 0.54 -0.5 4,307,208 + Ga0059261_4154 0.54 +0.6 4,307,208 + Ga0059261_4154 0.54 -1.4 4,307,209 - Ga0059261_4154 0.54 -0.7 4,307,209 - Ga0059261_4154 0.54 -3.0 4,307,209 - Ga0059261_4154 0.54 -0.1 4,307,659 + Ga0059261_4154 0.90 +1.2 4,307,659 + Ga0059261_4154 0.90 -1.1 4,307,659 + Ga0059261_4154 0.90 +0.1 4,307,660 - Ga0059261_4154 0.90 -0.4 4,307,660 - Ga0059261_4154 0.90 -0.9 4,307,660 - Ga0059261_4154 0.90 -0.3 4,307,660 - Ga0059261_4154 0.90 +0.9 4,307,660 - Ga0059261_4154 0.90 -0.7 4,307,699 + -0.6 4,307,699 + +0.2 4,307,700 - +0.1 4,307,700 - +1.1 4,307,700 - -0.6 4,307,700 - +0.1 4,307,756 + -0.2 4,307,756 + -0.2 4,307,756 + -0.4 4,307,757 - -0.6 4,307,757 - +0.0 4,307,757 - -0.9 4,307,757 - +0.1 4,307,757 - -1.4 4,307,797 + +0.1 4,307,797 + +0.4 4,307,797 + +0.7 4,307,797 + +0.1 4,307,798 - -0.2 4,308,054 + Ga0059261_4155 0.47 +0.5 4,308,054 + Ga0059261_4155 0.47 -0.4 4,308,055 - Ga0059261_4155 0.47 -0.1 4,308,055 - Ga0059261_4155 0.47 -0.4 4,308,055 - +0.4 4,308,055 - Ga0059261_4155 0.47 +0.8 4,308,055 - Ga0059261_4155 0.47 -0.2 4,308,055 - Ga0059261_4155 0.47 -0.3 4,308,055 - Ga0059261_4155 0.47 +1.1 4,308,055 - Ga0059261_4155 0.47 -0.3 4,308,055 - Ga0059261_4155 0.47 +0.4 4,308,055 - Ga0059261_4155 0.47 -0.4 4,308,055 - Ga0059261_4155 0.47 -0.1 4,308,147 + Ga0059261_4155 0.63 +0.5 4,308,147 + Ga0059261_4155 0.63 +0.4 4,308,148 - Ga0059261_4155 0.63 +1.6 4,308,148 - Ga0059261_4155 0.63 +0.9 4,308,148 - Ga0059261_4155 0.63 -0.0 4,308,148 - Ga0059261_4155 0.63 -0.3 4,308,148 - Ga0059261_4155 0.63 +0.2 4,308,237 + Ga0059261_4155 0.78 +0.9 4,308,237 + Ga0059261_4155 0.78 -0.6 4,308,237 + Ga0059261_4155 0.78 -0.4 4,308,238 - Ga0059261_4155 0.78 +0.7 4,308,291 - Ga0059261_4155 0.88 +0.1 4,308,333 + +0.4 4,308,333 + +0.6 4,308,389 + -0.5 4,308,475 + Ga0059261_4156 0.17 -0.1 4,308,476 - Ga0059261_4156 0.17 +0.4 4,308,476 - Ga0059261_4156 0.17 +0.3 4,308,521 + Ga0059261_4156 0.23 +1.4 4,308,522 - Ga0059261_4156 0.24 -0.6 4,308,522 - -0.1 4,308,523 + Ga0059261_4156 0.24 -0.0 4,308,523 + Ga0059261_4156 0.24 +0.1 4,308,523 + Ga0059261_4156 0.24 +0.3 4,308,523 + Ga0059261_4156 0.24 +0.8 4,308,523 + Ga0059261_4156 0.24 -0.0 4,308,523 + Ga0059261_4156 0.24 +0.1 4,308,523 + Ga0059261_4156 0.24 +0.0 4,308,523 + Ga0059261_4156 0.24 -0.2 4,308,523 + Ga0059261_4156 0.24 +0.2 4,308,523 + Ga0059261_4156 0.24 +0.1 4,308,523 + Ga0059261_4156 0.24 +0.3 4,308,524 - Ga0059261_4156 0.24 -2.0 4,308,524 - Ga0059261_4156 0.24 +1.5 4,308,524 - Ga0059261_4156 0.24 +0.1 4,308,524 - Ga0059261_4156 0.24 -0.8 4,308,524 - Ga0059261_4156 0.24 +0.1 4,308,524 - Ga0059261_4156 0.24 +0.3 4,308,524 - Ga0059261_4156 0.24 -0.8 4,308,524 - Ga0059261_4156 0.24 -0.6 4,308,524 - Ga0059261_4156 0.24 +0.1 4,308,526 + Ga0059261_4156 0.24 +0.0 4,308,527 - Ga0059261_4156 0.24 -0.3 4,308,527 - Ga0059261_4156 0.24 +0.2 4,308,527 - Ga0059261_4156 0.24 +1.2 4,308,617 + Ga0059261_4156 0.38 -0.1 4,308,617 + Ga0059261_4156 0.38 +0.3 4,308,617 + Ga0059261_4156 0.38 -0.4 4,308,617 + Ga0059261_4156 0.38 +0.0 4,308,617 + Ga0059261_4156 0.38 +0.2 4,308,617 + Ga0059261_4156 0.38 +1.5 4,308,617 + Ga0059261_4156 0.38 +0.1 4,308,618 - Ga0059261_4156 0.38 -0.3 4,308,618 - Ga0059261_4156 0.38 +0.5 4,308,620 - Ga0059261_4156 0.38 -0.6 4,308,620 - Ga0059261_4156 0.38 +0.3 4,308,620 - Ga0059261_4156 0.38 +0.5 4,308,704 - Ga0059261_4156 0.51 -0.9 4,308,733 + Ga0059261_4156 0.55 +3.9 4,308,733 + Ga0059261_4156 0.55 -0.6 4,308,734 - Ga0059261_4156 0.55 -0.1 4,308,734 - Ga0059261_4156 0.55 -0.0 4,308,734 - Ga0059261_4156 0.55 -0.1 4,308,867 + Ga0059261_4156 0.75 -0.3 4,308,868 - Ga0059261_4156 0.75 -0.4 4,308,892 + Ga0059261_4156 0.78 +0.0 4,308,892 + Ga0059261_4156 0.78 +0.2 4,308,892 + Ga0059261_4156 0.78 -1.8 4,308,892 - Ga0059261_4156 0.78 +1.9 4,308,893 - Ga0059261_4156 0.79 +0.1 4,308,893 - Ga0059261_4156 0.79 -1.6 4,308,893 - Ga0059261_4156 0.79 +0.1 4,308,893 - Ga0059261_4156 0.79 +0.1 4,309,011 + +0.2 4,309,011 + -0.6 4,309,011 + +0.4 4,309,011 + -0.2 4,309,012 - +0.3 4,309,012 - -0.2 4,309,067 + -0.3 4,309,068 - +0.7 4,309,068 - -0.6 4,309,068 - +0.6 4,309,231 + -0.3
Or see this region's nucleotide sequence