Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3344 and Ga0059261_3345 are separated by 82 nucleotides Ga0059261_3345 and Ga0059261_3346 are separated by 55 nucleotides Ga0059261_3346 and Ga0059261_3347 overlap by 4 nucleotides
Ga0059261_3344: Ga0059261_3344 - Predicted Peptidoglycan domain/Glycosyl hydrolase 108, at 3,474,794 to 3,475,336
_3344
Ga0059261_3345: Ga0059261_3345 - TlyA family rRNA methyltransferase/putative hemolysin, at 3,475,419 to 3,476,216
_3345
Ga0059261_3346: Ga0059261_3346 - hypothetical protein, at 3,476,272 to 3,476,424
_3346
Ga0059261_3347: Ga0059261_3347 - Domain of unknown function DUF87, at 3,476,421 to 3,477,917
_3347
Position (kb)
3476
3477 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3475.288 kb on - strand at 3475.367 kb on + strand at 3475.406 kb on + strand at 3475.407 kb on - strand at 3475.407 kb on - strand at 3475.418 kb on + strand at 3475.418 kb on + strand at 3475.419 kb on - strand at 3475.737 kb on + strand, within Ga0059261_3345 at 3475.737 kb on + strand, within Ga0059261_3345 at 3475.737 kb on + strand, within Ga0059261_3345 at 3475.859 kb on + strand at 3475.945 kb on + strand, within Ga0059261_3345 at 3476.199 kb on + strand at 3476.199 kb on + strand at 3476.200 kb on - strand at 3476.200 kb on - strand at 3476.271 kb on + strand at 3476.271 kb on + strand at 3476.272 kb on - strand at 3476.272 kb on - strand at 3476.277 kb on + strand at 3476.277 kb on + strand at 3476.277 kb on + strand at 3476.278 kb on - strand at 3476.278 kb on - strand at 3476.278 kb on - strand at 3476.278 kb on - strand at 3476.282 kb on + strand at 3476.282 kb on + strand at 3476.286 kb on + strand at 3476.353 kb on + strand, within Ga0059261_3346 at 3476.353 kb on + strand, within Ga0059261_3346 at 3476.353 kb on + strand, within Ga0059261_3346 at 3476.353 kb on + strand, within Ga0059261_3346 at 3476.354 kb on - strand, within Ga0059261_3346 at 3476.354 kb on - strand, within Ga0059261_3346 at 3476.356 kb on - strand, within Ga0059261_3346 at 3476.389 kb on + strand, within Ga0059261_3346 at 3476.389 kb on + strand, within Ga0059261_3346 at 3476.389 kb on + strand, within Ga0059261_3346 at 3476.389 kb on + strand, within Ga0059261_3346 at 3476.389 kb on + strand, within Ga0059261_3346 at 3476.389 kb on + strand, within Ga0059261_3346 at 3476.389 kb on + strand, within Ga0059261_3346 at 3476.390 kb on - strand, within Ga0059261_3346 at 3476.390 kb on - strand, within Ga0059261_3346 at 3476.390 kb on - strand, within Ga0059261_3346 at 3476.390 kb on - strand, within Ga0059261_3346 at 3476.390 kb on - strand, within Ga0059261_3346 at 3476.390 kb on - strand, within Ga0059261_3346 at 3476.422 kb on + strand at 3476.422 kb on + strand at 3476.423 kb on - strand at 3476.423 kb on - strand at 3476.423 kb on - strand at 3476.423 kb on - strand at 3476.423 kb on - strand at 3476.423 kb on - strand at 3476.600 kb on + strand, within Ga0059261_3347 at 3476.600 kb on + strand, within Ga0059261_3347 at 3476.600 kb on + strand, within Ga0059261_3347 at 3476.600 kb on + strand, within Ga0059261_3347 at 3476.601 kb on - strand, within Ga0059261_3347 at 3476.632 kb on + strand, within Ga0059261_3347 at 3476.860 kb on + strand, within Ga0059261_3347 at 3476.860 kb on + strand at 3476.860 kb on + strand at 3476.860 kb on + strand, within Ga0059261_3347 at 3476.861 kb on - strand at 3477.092 kb on + strand, within Ga0059261_3347
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 3,475,288 - -0.4 3,475,367 + -0.6 3,475,406 + +0.5 3,475,407 - -0.1 3,475,407 - -1.0 3,475,418 + -0.1 3,475,418 + +0.4 3,475,419 - -0.6 3,475,737 + Ga0059261_3345 0.40 -2.8 3,475,737 + Ga0059261_3345 0.40 +1.1 3,475,737 + Ga0059261_3345 0.40 +0.9 3,475,859 + -0.7 3,475,945 + Ga0059261_3345 0.66 -0.5 3,476,199 + -0.1 3,476,199 + -0.5 3,476,200 - -0.9 3,476,200 - +0.1 3,476,271 + -0.5 3,476,271 + -0.1 3,476,272 - -0.2 3,476,272 - +1.0 3,476,277 + -0.8 3,476,277 + -2.1 3,476,277 + +0.9 3,476,278 - +0.3 3,476,278 - -0.8 3,476,278 - -0.0 3,476,278 - +0.6 3,476,282 + -0.6 3,476,282 + -0.4 3,476,286 + -0.1 3,476,353 + Ga0059261_3346 0.53 -0.2 3,476,353 + Ga0059261_3346 0.53 +1.1 3,476,353 + Ga0059261_3346 0.53 +0.4 3,476,353 + Ga0059261_3346 0.53 -0.5 3,476,354 - Ga0059261_3346 0.54 -0.3 3,476,354 - Ga0059261_3346 0.54 -0.5 3,476,356 - Ga0059261_3346 0.55 +0.0 3,476,389 + Ga0059261_3346 0.76 +0.9 3,476,389 + Ga0059261_3346 0.76 +0.2 3,476,389 + Ga0059261_3346 0.76 -0.1 3,476,389 + Ga0059261_3346 0.76 -0.1 3,476,389 + Ga0059261_3346 0.76 +1.4 3,476,389 + Ga0059261_3346 0.76 +0.5 3,476,389 + Ga0059261_3346 0.76 +1.2 3,476,390 - Ga0059261_3346 0.77 +0.9 3,476,390 - Ga0059261_3346 0.77 -0.2 3,476,390 - Ga0059261_3346 0.77 +0.7 3,476,390 - Ga0059261_3346 0.77 +0.3 3,476,390 - Ga0059261_3346 0.77 -1.2 3,476,390 - Ga0059261_3346 0.77 +0.1 3,476,422 + -0.1 3,476,422 + -0.0 3,476,423 - -0.1 3,476,423 - -0.9 3,476,423 - -0.4 3,476,423 - -0.5 3,476,423 - -0.2 3,476,423 - +0.1 3,476,600 + Ga0059261_3347 0.12 -0.1 3,476,600 + Ga0059261_3347 0.12 +0.0 3,476,600 + Ga0059261_3347 0.12 -0.2 3,476,600 + Ga0059261_3347 0.12 -0.9 3,476,601 - Ga0059261_3347 0.12 -0.2 3,476,632 + Ga0059261_3347 0.14 +0.1 3,476,860 + Ga0059261_3347 0.29 -0.9 3,476,860 + +0.9 3,476,860 + -0.2 3,476,860 + Ga0059261_3347 0.29 +1.3 3,476,861 - +0.1 3,477,092 + Ga0059261_3347 0.45 +1.2
Or see this region's nucleotide sequence