Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3346

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3344 and Ga0059261_3345 are separated by 82 nucleotidesGa0059261_3345 and Ga0059261_3346 are separated by 55 nucleotidesGa0059261_3346 and Ga0059261_3347 overlap by 4 nucleotides Ga0059261_3344: Ga0059261_3344 - Predicted Peptidoglycan domain/Glycosyl hydrolase 108, at 3,474,794 to 3,475,336 _3344 Ga0059261_3345: Ga0059261_3345 - TlyA family rRNA methyltransferase/putative hemolysin, at 3,475,419 to 3,476,216 _3345 Ga0059261_3346: Ga0059261_3346 - hypothetical protein, at 3,476,272 to 3,476,424 _3346 Ga0059261_3347: Ga0059261_3347 - Domain of unknown function DUF87, at 3,476,421 to 3,477,917 _3347 Position (kb) 3476 3477Strain fitness (log2 ratio) -3 -2 -1 0 1at 3475.288 kb on - strandat 3475.367 kb on + strandat 3475.406 kb on + strandat 3475.407 kb on - strandat 3475.407 kb on - strandat 3475.418 kb on + strandat 3475.418 kb on + strandat 3475.419 kb on - strandat 3475.737 kb on + strand, within Ga0059261_3345at 3475.737 kb on + strand, within Ga0059261_3345at 3475.737 kb on + strand, within Ga0059261_3345at 3475.859 kb on + strandat 3475.945 kb on + strand, within Ga0059261_3345at 3476.199 kb on + strandat 3476.199 kb on + strandat 3476.200 kb on - strandat 3476.200 kb on - strandat 3476.271 kb on + strandat 3476.271 kb on + strandat 3476.272 kb on - strandat 3476.272 kb on - strandat 3476.277 kb on + strandat 3476.277 kb on + strandat 3476.277 kb on + strandat 3476.278 kb on - strandat 3476.278 kb on - strandat 3476.278 kb on - strandat 3476.278 kb on - strandat 3476.282 kb on + strandat 3476.282 kb on + strandat 3476.286 kb on + strandat 3476.353 kb on + strand, within Ga0059261_3346at 3476.353 kb on + strand, within Ga0059261_3346at 3476.353 kb on + strand, within Ga0059261_3346at 3476.353 kb on + strand, within Ga0059261_3346at 3476.354 kb on - strand, within Ga0059261_3346at 3476.354 kb on - strand, within Ga0059261_3346at 3476.356 kb on - strand, within Ga0059261_3346at 3476.389 kb on + strand, within Ga0059261_3346at 3476.389 kb on + strand, within Ga0059261_3346at 3476.389 kb on + strand, within Ga0059261_3346at 3476.389 kb on + strand, within Ga0059261_3346at 3476.389 kb on + strand, within Ga0059261_3346at 3476.389 kb on + strand, within Ga0059261_3346at 3476.389 kb on + strand, within Ga0059261_3346at 3476.390 kb on - strand, within Ga0059261_3346at 3476.390 kb on - strand, within Ga0059261_3346at 3476.390 kb on - strand, within Ga0059261_3346at 3476.390 kb on - strand, within Ga0059261_3346at 3476.390 kb on - strand, within Ga0059261_3346at 3476.390 kb on - strand, within Ga0059261_3346at 3476.422 kb on + strandat 3476.422 kb on + strandat 3476.423 kb on - strandat 3476.423 kb on - strandat 3476.423 kb on - strandat 3476.423 kb on - strandat 3476.423 kb on - strandat 3476.423 kb on - strandat 3476.600 kb on + strand, within Ga0059261_3347at 3476.600 kb on + strand, within Ga0059261_3347at 3476.600 kb on + strand, within Ga0059261_3347at 3476.600 kb on + strand, within Ga0059261_3347at 3476.601 kb on - strand, within Ga0059261_3347at 3476.632 kb on + strand, within Ga0059261_3347at 3476.860 kb on + strand, within Ga0059261_3347at 3476.860 kb on + strandat 3476.860 kb on + strandat 3476.860 kb on + strand, within Ga0059261_3347at 3476.861 kb on - strandat 3477.092 kb on + strand, within Ga0059261_3347

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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3,475,288 - -0.4
3,475,367 + -0.6
3,475,406 + +0.5
3,475,407 - -0.1
3,475,407 - -1.0
3,475,418 + -0.1
3,475,418 + +0.4
3,475,419 - -0.6
3,475,737 + Ga0059261_3345 0.40 -2.8
3,475,737 + Ga0059261_3345 0.40 +1.1
3,475,737 + Ga0059261_3345 0.40 +0.9
3,475,859 + -0.7
3,475,945 + Ga0059261_3345 0.66 -0.5
3,476,199 + -0.1
3,476,199 + -0.5
3,476,200 - -0.9
3,476,200 - +0.1
3,476,271 + -0.5
3,476,271 + -0.1
3,476,272 - -0.2
3,476,272 - +1.0
3,476,277 + -0.8
3,476,277 + -2.1
3,476,277 + +0.9
3,476,278 - +0.3
3,476,278 - -0.8
3,476,278 - -0.0
3,476,278 - +0.6
3,476,282 + -0.6
3,476,282 + -0.4
3,476,286 + -0.1
3,476,353 + Ga0059261_3346 0.53 -0.2
3,476,353 + Ga0059261_3346 0.53 +1.1
3,476,353 + Ga0059261_3346 0.53 +0.4
3,476,353 + Ga0059261_3346 0.53 -0.5
3,476,354 - Ga0059261_3346 0.54 -0.3
3,476,354 - Ga0059261_3346 0.54 -0.5
3,476,356 - Ga0059261_3346 0.55 +0.0
3,476,389 + Ga0059261_3346 0.76 +0.9
3,476,389 + Ga0059261_3346 0.76 +0.2
3,476,389 + Ga0059261_3346 0.76 -0.1
3,476,389 + Ga0059261_3346 0.76 -0.1
3,476,389 + Ga0059261_3346 0.76 +1.4
3,476,389 + Ga0059261_3346 0.76 +0.5
3,476,389 + Ga0059261_3346 0.76 +1.2
3,476,390 - Ga0059261_3346 0.77 +0.9
3,476,390 - Ga0059261_3346 0.77 -0.2
3,476,390 - Ga0059261_3346 0.77 +0.7
3,476,390 - Ga0059261_3346 0.77 +0.3
3,476,390 - Ga0059261_3346 0.77 -1.2
3,476,390 - Ga0059261_3346 0.77 +0.1
3,476,422 + -0.1
3,476,422 + -0.0
3,476,423 - -0.1
3,476,423 - -0.9
3,476,423 - -0.4
3,476,423 - -0.5
3,476,423 - -0.2
3,476,423 - +0.1
3,476,600 + Ga0059261_3347 0.12 -0.1
3,476,600 + Ga0059261_3347 0.12 +0.0
3,476,600 + Ga0059261_3347 0.12 -0.2
3,476,600 + Ga0059261_3347 0.12 -0.9
3,476,601 - Ga0059261_3347 0.12 -0.2
3,476,632 + Ga0059261_3347 0.14 +0.1
3,476,860 + Ga0059261_3347 0.29 -0.9
3,476,860 + +0.9
3,476,860 + -0.2
3,476,860 + Ga0059261_3347 0.29 +1.3
3,476,861 - +0.1
3,477,092 + Ga0059261_3347 0.45 +1.2

Or see this region's nucleotide sequence