Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3141

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3139 and Ga0059261_3140 are separated by 104 nucleotidesGa0059261_3140 and Ga0059261_3141 overlap by 11 nucleotidesGa0059261_3141 and Ga0059261_3142 overlap by 4 nucleotidesGa0059261_3142 and Ga0059261_3143 are separated by 7 nucleotides Ga0059261_3139: Ga0059261_3139 - Predicted membrane protein, at 3,282,253 to 3,282,912 _3139 Ga0059261_3140: Ga0059261_3140 - Regulator of competence-specific genes, at 3,283,017 to 3,283,370 _3140 Ga0059261_3141: Ga0059261_3141 - Acetyltransferases, at 3,283,360 to 3,283,839 _3141 Ga0059261_3142: Ga0059261_3142 - Predicted permeases, at 3,283,836 to 3,284,774 _3142 Ga0059261_3143: Ga0059261_3143 - Zn-dependent hydrolases, including glyoxylases, at 3,284,782 to 3,285,690 _3143 Position (kb) 3283 3284Strain fitness (log2 ratio) -2 -1 0 1 2at 3282.655 kb on + strand, within Ga0059261_3139at 3282.655 kb on + strand, within Ga0059261_3139at 3282.655 kb on + strand, within Ga0059261_3139at 3282.655 kb on + strand, within Ga0059261_3139at 3282.656 kb on - strand, within Ga0059261_3139at 3282.656 kb on - strand, within Ga0059261_3139at 3282.656 kb on - strand, within Ga0059261_3139at 3282.667 kb on + strand, within Ga0059261_3139at 3282.667 kb on + strand, within Ga0059261_3139at 3282.682 kb on + strand, within Ga0059261_3139at 3282.683 kb on - strand, within Ga0059261_3139at 3282.683 kb on - strand, within Ga0059261_3139at 3282.683 kb on - strand, within Ga0059261_3139at 3282.746 kb on - strand, within Ga0059261_3139at 3282.769 kb on + strand, within Ga0059261_3139at 3282.770 kb on - strand, within Ga0059261_3139at 3282.770 kb on - strand, within Ga0059261_3139at 3282.911 kb on - strandat 3282.975 kb on + strandat 3282.976 kb on - strandat 3282.976 kb on - strandat 3283.112 kb on - strand, within Ga0059261_3140at 3283.129 kb on + strand, within Ga0059261_3140at 3283.129 kb on + strand, within Ga0059261_3140at 3283.129 kb on + strand, within Ga0059261_3140at 3283.129 kb on + strand, within Ga0059261_3140at 3283.130 kb on - strand, within Ga0059261_3140at 3283.130 kb on - strand, within Ga0059261_3140at 3283.273 kb on + strand, within Ga0059261_3140at 3283.273 kb on + strand, within Ga0059261_3140at 3283.273 kb on + strand, within Ga0059261_3140at 3283.273 kb on + strand, within Ga0059261_3140at 3283.274 kb on - strand, within Ga0059261_3140at 3283.449 kb on - strand, within Ga0059261_3141at 3283.449 kb on - strand, within Ga0059261_3141at 3283.766 kb on + strand, within Ga0059261_3141at 3283.767 kb on - strand, within Ga0059261_3141at 3283.767 kb on - strand, within Ga0059261_3141at 3283.944 kb on + strand, within Ga0059261_3142at 3283.945 kb on - strand, within Ga0059261_3142at 3283.945 kb on - strand, within Ga0059261_3142at 3283.998 kb on - strand, within Ga0059261_3142at 3283.998 kb on - strand, within Ga0059261_3142at 3283.999 kb on + strand, within Ga0059261_3142at 3283.999 kb on + strand, within Ga0059261_3142at 3283.999 kb on + strand, within Ga0059261_3142at 3283.999 kb on + strand, within Ga0059261_3142at 3284.000 kb on - strand, within Ga0059261_3142at 3284.001 kb on + strand, within Ga0059261_3142at 3284.017 kb on + strand, within Ga0059261_3142at 3284.017 kb on + strand, within Ga0059261_3142at 3284.017 kb on + strand, within Ga0059261_3142at 3284.017 kb on + strand, within Ga0059261_3142at 3284.018 kb on - strand, within Ga0059261_3142at 3284.018 kb on - strand, within Ga0059261_3142at 3284.018 kb on - strand, within Ga0059261_3142at 3284.018 kb on - strand, within Ga0059261_3142at 3284.018 kb on - strand, within Ga0059261_3142at 3284.018 kb on - strand, within Ga0059261_3142at 3284.038 kb on + strand, within Ga0059261_3142at 3284.038 kb on + strand, within Ga0059261_3142at 3284.039 kb on - strand, within Ga0059261_3142at 3284.149 kb on + strand, within Ga0059261_3142at 3284.149 kb on + strand, within Ga0059261_3142at 3284.149 kb on + strand, within Ga0059261_3142at 3284.149 kb on + strand, within Ga0059261_3142at 3284.150 kb on - strand, within Ga0059261_3142at 3284.242 kb on + strand, within Ga0059261_3142at 3284.242 kb on + strand, within Ga0059261_3142at 3284.242 kb on + strand, within Ga0059261_3142at 3284.242 kb on + strand, within Ga0059261_3142at 3284.242 kb on + strand, within Ga0059261_3142at 3284.242 kb on + strand, within Ga0059261_3142at 3284.242 kb on + strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.243 kb on - strand, within Ga0059261_3142at 3284.378 kb on + strand, within Ga0059261_3142at 3284.378 kb on + strand, within Ga0059261_3142at 3284.378 kb on + strand, within Ga0059261_3142at 3284.378 kb on + strand, within Ga0059261_3142at 3284.379 kb on - strand, within Ga0059261_3142at 3284.379 kb on - strand, within Ga0059261_3142at 3284.379 kb on - strand, within Ga0059261_3142at 3284.379 kb on - strand, within Ga0059261_3142at 3284.520 kb on + strand, within Ga0059261_3142at 3284.573 kb on - strand, within Ga0059261_3142at 3284.573 kb on - strandat 3284.624 kb on + strand, within Ga0059261_3142at 3284.624 kb on + strand, within Ga0059261_3142at 3284.625 kb on - strand, within Ga0059261_3142at 3284.625 kb on - strand, within Ga0059261_3142at 3284.625 kb on - strand, within Ga0059261_3142at 3284.625 kb on - strand, within Ga0059261_3142at 3284.626 kb on + strand, within Ga0059261_3142at 3284.626 kb on + strand, within Ga0059261_3142at 3284.626 kb on + strand, within Ga0059261_3142at 3284.626 kb on + strand, within Ga0059261_3142at 3284.626 kb on + strand, within Ga0059261_3142at 3284.627 kb on - strand, within Ga0059261_3142at 3284.627 kb on - strand, within Ga0059261_3142at 3284.627 kb on - strand, within Ga0059261_3142at 3284.834 kb on + strandat 3284.834 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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3,282,655 + Ga0059261_3139 0.61 +0.8
3,282,655 + Ga0059261_3139 0.61 -0.9
3,282,655 + Ga0059261_3139 0.61 -0.7
3,282,655 + Ga0059261_3139 0.61 +0.3
3,282,656 - Ga0059261_3139 0.61 -1.7
3,282,656 - Ga0059261_3139 0.61 -0.6
3,282,656 - Ga0059261_3139 0.61 -0.3
3,282,667 + Ga0059261_3139 0.63 -0.4
3,282,667 + Ga0059261_3139 0.63 +1.1
3,282,682 + Ga0059261_3139 0.65 +0.7
3,282,683 - Ga0059261_3139 0.65 +0.1
3,282,683 - Ga0059261_3139 0.65 +0.7
3,282,683 - Ga0059261_3139 0.65 +1.1
3,282,746 - Ga0059261_3139 0.75 -0.2
3,282,769 + Ga0059261_3139 0.78 +0.3
3,282,770 - Ga0059261_3139 0.78 -0.1
3,282,770 - Ga0059261_3139 0.78 -0.5
3,282,911 - +0.3
3,282,975 + -0.2
3,282,976 - +0.0
3,282,976 - +0.1
3,283,112 - Ga0059261_3140 0.27 +0.1
3,283,129 + Ga0059261_3140 0.32 +1.8
3,283,129 + Ga0059261_3140 0.32 -0.5
3,283,129 + Ga0059261_3140 0.32 +0.3
3,283,129 + Ga0059261_3140 0.32 -0.1
3,283,130 - Ga0059261_3140 0.32 -0.9
3,283,130 - Ga0059261_3140 0.32 +0.4
3,283,273 + Ga0059261_3140 0.72 +0.4
3,283,273 + Ga0059261_3140 0.72 -0.4
3,283,273 + Ga0059261_3140 0.72 +0.6
3,283,273 + Ga0059261_3140 0.72 -1.8
3,283,274 - Ga0059261_3140 0.73 -1.2
3,283,449 - Ga0059261_3141 0.19 -0.5
3,283,449 - Ga0059261_3141 0.19 -0.4
3,283,766 + Ga0059261_3141 0.85 -0.4
3,283,767 - Ga0059261_3141 0.85 +0.5
3,283,767 - Ga0059261_3141 0.85 -0.5
3,283,944 + Ga0059261_3142 0.12 +0.9
3,283,945 - Ga0059261_3142 0.12 -0.4
3,283,945 - Ga0059261_3142 0.12 +1.1
3,283,998 - Ga0059261_3142 0.17 +0.4
3,283,998 - Ga0059261_3142 0.17 -0.3
3,283,999 + Ga0059261_3142 0.17 -0.2
3,283,999 + Ga0059261_3142 0.17 +0.2
3,283,999 + Ga0059261_3142 0.17 -0.2
3,283,999 + Ga0059261_3142 0.17 -0.2
3,284,000 - Ga0059261_3142 0.17 +0.2
3,284,001 + Ga0059261_3142 0.18 +0.1
3,284,017 + Ga0059261_3142 0.19 +0.3
3,284,017 + Ga0059261_3142 0.19 -0.9
3,284,017 + Ga0059261_3142 0.19 -0.1
3,284,017 + Ga0059261_3142 0.19 -0.2
3,284,018 - Ga0059261_3142 0.19 -0.3
3,284,018 - Ga0059261_3142 0.19 -0.2
3,284,018 - Ga0059261_3142 0.19 -1.2
3,284,018 - Ga0059261_3142 0.19 -0.7
3,284,018 - Ga0059261_3142 0.19 +0.4
3,284,018 - Ga0059261_3142 0.19 -0.3
3,284,038 + Ga0059261_3142 0.22 +0.7
3,284,038 + Ga0059261_3142 0.22 +0.1
3,284,039 - Ga0059261_3142 0.22 -0.0
3,284,149 + Ga0059261_3142 0.33 +0.1
3,284,149 + Ga0059261_3142 0.33 -0.1
3,284,149 + Ga0059261_3142 0.33 +0.8
3,284,149 + Ga0059261_3142 0.33 +0.1
3,284,150 - Ga0059261_3142 0.33 -1.5
3,284,242 + Ga0059261_3142 0.43 -0.6
3,284,242 + Ga0059261_3142 0.43 +0.2
3,284,242 + Ga0059261_3142 0.43 -1.1
3,284,242 + Ga0059261_3142 0.43 +0.4
3,284,242 + Ga0059261_3142 0.43 +0.1
3,284,242 + Ga0059261_3142 0.43 -0.7
3,284,242 + Ga0059261_3142 0.43 -0.8
3,284,243 - Ga0059261_3142 0.43 +0.8
3,284,243 - Ga0059261_3142 0.43 +0.8
3,284,243 - Ga0059261_3142 0.43 -0.4
3,284,243 - Ga0059261_3142 0.43 +0.0
3,284,243 - Ga0059261_3142 0.43 -0.5
3,284,243 - Ga0059261_3142 0.43 +0.4
3,284,243 - Ga0059261_3142 0.43 -0.2
3,284,243 - Ga0059261_3142 0.43 +0.0
3,284,243 - Ga0059261_3142 0.43 -0.2
3,284,243 - Ga0059261_3142 0.43 -0.7
3,284,378 + Ga0059261_3142 0.58 -0.2
3,284,378 + Ga0059261_3142 0.58 -0.8
3,284,378 + Ga0059261_3142 0.58 +0.4
3,284,378 + Ga0059261_3142 0.58 -1.4
3,284,379 - Ga0059261_3142 0.58 +1.5
3,284,379 - Ga0059261_3142 0.58 +0.2
3,284,379 - Ga0059261_3142 0.58 +0.6
3,284,379 - Ga0059261_3142 0.58 -1.1
3,284,520 + Ga0059261_3142 0.73 -0.6
3,284,573 - Ga0059261_3142 0.78 +0.2
3,284,573 - -0.9
3,284,624 + Ga0059261_3142 0.84 +0.0
3,284,624 + Ga0059261_3142 0.84 -0.5
3,284,625 - Ga0059261_3142 0.84 +1.2
3,284,625 - Ga0059261_3142 0.84 +0.0
3,284,625 - Ga0059261_3142 0.84 -0.2
3,284,625 - Ga0059261_3142 0.84 +0.1
3,284,626 + Ga0059261_3142 0.84 -1.0
3,284,626 + Ga0059261_3142 0.84 -0.3
3,284,626 + Ga0059261_3142 0.84 -0.0
3,284,626 + Ga0059261_3142 0.84 +0.5
3,284,626 + Ga0059261_3142 0.84 +0.1
3,284,627 - Ga0059261_3142 0.84 -0.9
3,284,627 - Ga0059261_3142 0.84 -0.5
3,284,627 - Ga0059261_3142 0.84 -2.0
3,284,834 + +0.2
3,284,834 + +0.4

Or see this region's nucleotide sequence