Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2171

Experiment: Cobalt chloride 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2170 and Ga0059261_2171 overlap by 4 nucleotidesGa0059261_2171 and Ga0059261_2172 are separated by 1 nucleotides Ga0059261_2170: Ga0059261_2170 - Thioredoxin domain-containing protein, at 2,280,600 to 2,281,511 _2170 Ga0059261_2171: Ga0059261_2171 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 2,281,508 to 2,282,131 _2171 Ga0059261_2172: Ga0059261_2172 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 2,282,133 to 2,283,350 _2172 Position (kb) 2281 2282 2283Strain fitness (log2 ratio) -2 -1 0 1at 2280.520 kb on + strandat 2280.520 kb on + strandat 2280.520 kb on + strandat 2280.521 kb on - strandat 2280.521 kb on - strandat 2280.521 kb on - strandat 2280.567 kb on + strandat 2280.567 kb on + strandat 2280.567 kb on + strandat 2280.567 kb on + strandat 2280.567 kb on + strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.568 kb on - strandat 2280.766 kb on - strand, within Ga0059261_2170at 2280.766 kb on - strand, within Ga0059261_2170at 2280.766 kb on - strand, within Ga0059261_2170at 2280.858 kb on + strand, within Ga0059261_2170at 2280.858 kb on + strand, within Ga0059261_2170at 2280.858 kb on + strand, within Ga0059261_2170at 2280.858 kb on + strand, within Ga0059261_2170at 2280.858 kb on + strand, within Ga0059261_2170at 2280.858 kb on + strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2280.859 kb on - strand, within Ga0059261_2170at 2281.021 kb on + strand, within Ga0059261_2170at 2281.021 kb on + strand, within Ga0059261_2170at 2281.021 kb on + strand, within Ga0059261_2170at 2281.021 kb on + strand, within Ga0059261_2170at 2281.021 kb on + strand, within Ga0059261_2170at 2281.021 kb on + strand, within Ga0059261_2170at 2281.021 kb on + strand, within Ga0059261_2170at 2281.022 kb on - strand, within Ga0059261_2170at 2281.022 kb on - strand, within Ga0059261_2170at 2281.022 kb on - strand, within Ga0059261_2170at 2281.059 kb on + strand, within Ga0059261_2170at 2281.059 kb on + strand, within Ga0059261_2170at 2281.059 kb on + strand, within Ga0059261_2170at 2281.059 kb on + strand, within Ga0059261_2170at 2281.059 kb on + strand, within Ga0059261_2170at 2281.059 kb on + strandat 2281.059 kb on + strand, within Ga0059261_2170at 2281.060 kb on - strand, within Ga0059261_2170at 2281.060 kb on - strand, within Ga0059261_2170at 2281.060 kb on - strand, within Ga0059261_2170at 2281.060 kb on - strand, within Ga0059261_2170at 2281.060 kb on - strand, within Ga0059261_2170at 2281.312 kb on - strand, within Ga0059261_2170at 2281.312 kb on - strand, within Ga0059261_2170at 2281.312 kb on - strand, within Ga0059261_2170at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.582 kb on + strand, within Ga0059261_2171at 2281.583 kb on - strand, within Ga0059261_2171at 2281.583 kb on - strand, within Ga0059261_2171at 2281.583 kb on - strand, within Ga0059261_2171at 2281.583 kb on - strand, within Ga0059261_2171at 2281.583 kb on - strand, within Ga0059261_2171at 2281.599 kb on - strand, within Ga0059261_2171at 2281.934 kb on + strand, within Ga0059261_2171at 2281.934 kb on + strand, within Ga0059261_2171at 2281.934 kb on + strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2281.935 kb on - strand, within Ga0059261_2171at 2282.129 kb on + strandat 2282.129 kb on + strandat 2282.129 kb on + strandat 2282.129 kb on + strandat 2282.130 kb on - strandat 2282.130 kb on - strandat 2282.130 kb on - strandat 2282.130 kb on - strandat 2282.130 kb on - strandat 2282.130 kb on - strandat 2282.130 kb on - strandat 2282.130 kb on - strandat 2282.134 kb on + strandat 2282.134 kb on + strandat 2282.134 kb on + strandat 2282.135 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
remove
2,280,520 + -0.6
2,280,520 + -0.4
2,280,520 + +0.9
2,280,521 - +0.2
2,280,521 - -1.7
2,280,521 - +0.3
2,280,567 + -0.2
2,280,567 + +0.6
2,280,567 + -0.2
2,280,567 + +0.2
2,280,567 + +0.5
2,280,568 - -0.3
2,280,568 - -0.0
2,280,568 - -1.2
2,280,568 - +0.7
2,280,568 - -0.6
2,280,568 - -0.3
2,280,568 - +0.1
2,280,568 - +0.8
2,280,568 - +0.1
2,280,568 - -0.5
2,280,766 - Ga0059261_2170 0.18 -0.1
2,280,766 - Ga0059261_2170 0.18 -0.0
2,280,766 - Ga0059261_2170 0.18 -0.8
2,280,858 + Ga0059261_2170 0.28 +0.3
2,280,858 + Ga0059261_2170 0.28 -0.2
2,280,858 + Ga0059261_2170 0.28 -0.9
2,280,858 + Ga0059261_2170 0.28 +0.5
2,280,858 + Ga0059261_2170 0.28 +0.3
2,280,858 + Ga0059261_2170 0.28 +0.2
2,280,859 - Ga0059261_2170 0.28 -0.4
2,280,859 - Ga0059261_2170 0.28 -0.2
2,280,859 - Ga0059261_2170 0.28 -0.6
2,280,859 - Ga0059261_2170 0.28 -0.3
2,280,859 - Ga0059261_2170 0.28 -2.3
2,280,859 - Ga0059261_2170 0.28 -0.8
2,280,859 - Ga0059261_2170 0.28 +0.0
2,280,859 - Ga0059261_2170 0.28 +0.3
2,280,859 - Ga0059261_2170 0.28 +1.0
2,281,021 + Ga0059261_2170 0.46 +0.5
2,281,021 + Ga0059261_2170 0.46 -0.6
2,281,021 + Ga0059261_2170 0.46 -0.1
2,281,021 + Ga0059261_2170 0.46 -0.3
2,281,021 + Ga0059261_2170 0.46 -0.3
2,281,021 + Ga0059261_2170 0.46 +0.6
2,281,021 + Ga0059261_2170 0.46 -0.7
2,281,022 - Ga0059261_2170 0.46 -0.5
2,281,022 - Ga0059261_2170 0.46 -1.0
2,281,022 - Ga0059261_2170 0.46 -0.3
2,281,059 + Ga0059261_2170 0.50 -0.2
2,281,059 + Ga0059261_2170 0.50 +1.4
2,281,059 + Ga0059261_2170 0.50 -0.1
2,281,059 + Ga0059261_2170 0.50 -0.8
2,281,059 + Ga0059261_2170 0.50 +0.1
2,281,059 + +0.5
2,281,059 + Ga0059261_2170 0.50 +0.2
2,281,060 - Ga0059261_2170 0.50 -0.1
2,281,060 - Ga0059261_2170 0.50 -0.4
2,281,060 - Ga0059261_2170 0.50 -0.2
2,281,060 - Ga0059261_2170 0.50 -0.1
2,281,060 - Ga0059261_2170 0.50 +0.2
2,281,312 - Ga0059261_2170 0.78 +0.7
2,281,312 - Ga0059261_2170 0.78 -0.9
2,281,312 - Ga0059261_2170 0.78 +0.3
2,281,582 + Ga0059261_2171 0.12 +0.9
2,281,582 + Ga0059261_2171 0.12 -0.6
2,281,582 + Ga0059261_2171 0.12 +0.4
2,281,582 + Ga0059261_2171 0.12 -0.0
2,281,582 + Ga0059261_2171 0.12 +0.1
2,281,582 + Ga0059261_2171 0.12 +0.2
2,281,582 + Ga0059261_2171 0.12 +0.5
2,281,582 + Ga0059261_2171 0.12 +0.8
2,281,582 + Ga0059261_2171 0.12 +0.4
2,281,583 - Ga0059261_2171 0.12 +0.2
2,281,583 - Ga0059261_2171 0.12 +0.6
2,281,583 - Ga0059261_2171 0.12 +0.4
2,281,583 - Ga0059261_2171 0.12 +0.6
2,281,583 - Ga0059261_2171 0.12 +0.4
2,281,599 - Ga0059261_2171 0.15 +0.3
2,281,934 + Ga0059261_2171 0.68 -0.3
2,281,934 + Ga0059261_2171 0.68 +0.5
2,281,934 + Ga0059261_2171 0.68 -0.1
2,281,935 - Ga0059261_2171 0.68 +0.7
2,281,935 - Ga0059261_2171 0.68 +0.4
2,281,935 - Ga0059261_2171 0.68 -0.5
2,281,935 - Ga0059261_2171 0.68 -0.3
2,281,935 - Ga0059261_2171 0.68 +0.1
2,281,935 - Ga0059261_2171 0.68 +0.8
2,281,935 - Ga0059261_2171 0.68 +0.9
2,281,935 - Ga0059261_2171 0.68 -0.9
2,281,935 - Ga0059261_2171 0.68 -0.1
2,282,129 + -0.4
2,282,129 + +0.0
2,282,129 + -0.3
2,282,129 + +0.7
2,282,130 - -1.0
2,282,130 - +0.2
2,282,130 - +0.5
2,282,130 - -1.0
2,282,130 - +1.3
2,282,130 - -0.6
2,282,130 - -0.1
2,282,130 - +0.2
2,282,134 + -0.2
2,282,134 + -0.1
2,282,134 + -0.3
2,282,135 - +0.2

Or see this region's nucleotide sequence