Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2076

Experiment: Cobalt chloride 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2075 and Ga0059261_2076 are separated by 168 nucleotidesGa0059261_2076 and Ga0059261_2077 are separated by 9 nucleotidesGa0059261_2077 and Ga0059261_2078 are separated by 0 nucleotides Ga0059261_2075: Ga0059261_2075 - Flagellin and related hook-associated proteins, at 2,175,172 to 2,176,629 _2075 Ga0059261_2076: Ga0059261_2076 - hypothetical protein, at 2,176,798 to 2,177,106 _2076 Ga0059261_2077: Ga0059261_2077 - Uncharacterized protein conserved in bacteria, at 2,177,116 to 2,177,469 _2077 Ga0059261_2078: Ga0059261_2078 - transcriptional regulator, ArsR family, at 2,177,470 to 2,178,138 _2078 Position (kb) 2176 2177 2178Strain fitness (log2 ratio) -2 -1 0 1at 2176.003 kb on + strand, within Ga0059261_2075at 2176.003 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strandat 2176.006 kb on + strand, within Ga0059261_2075at 2176.006 kb on + strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.007 kb on - strand, within Ga0059261_2075at 2176.628 kb on - strandat 2176.628 kb on - strandat 2176.628 kb on - strandat 2176.628 kb on - strandat 2176.628 kb on - strandat 2177.011 kb on - strand, within Ga0059261_2076at 2177.039 kb on - strand, within Ga0059261_2076at 2177.117 kb on + strandat 2177.117 kb on + strandat 2177.117 kb on + strandat 2177.117 kb on + strandat 2177.117 kb on + strandat 2177.117 kb on + strandat 2177.118 kb on - strandat 2177.118 kb on - strandat 2177.118 kb on - strandat 2177.217 kb on + strand, within Ga0059261_2077at 2177.247 kb on - strand, within Ga0059261_2077at 2177.292 kb on + strand, within Ga0059261_2077at 2177.292 kb on + strand, within Ga0059261_2077at 2177.293 kb on - strand, within Ga0059261_2077at 2177.453 kb on + strandat 2177.453 kb on + strandat 2177.454 kb on - strandat 2177.454 kb on - strandat 2177.454 kb on - strandat 2177.471 kb on + strandat 2177.471 kb on + strandat 2177.472 kb on - strandat 2177.472 kb on - strandat 2177.472 kb on - strandat 2177.472 kb on - strandat 2177.592 kb on + strand, within Ga0059261_2078at 2177.592 kb on + strand, within Ga0059261_2078at 2177.798 kb on + strand, within Ga0059261_2078at 2177.799 kb on - strand, within Ga0059261_2078at 2177.799 kb on - strand, within Ga0059261_2078at 2177.799 kb on - strand, within Ga0059261_2078at 2177.927 kb on + strand, within Ga0059261_2078at 2177.927 kb on + strand, within Ga0059261_2078at 2177.927 kb on + strand, within Ga0059261_2078at 2177.927 kb on + strand, within Ga0059261_2078at 2177.928 kb on - strand, within Ga0059261_2078at 2177.928 kb on - strand, within Ga0059261_2078at 2177.928 kb on - strand, within Ga0059261_2078at 2177.928 kb on - strand, within Ga0059261_2078

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
remove
2,176,003 + Ga0059261_2075 0.57 +0.3
2,176,003 + Ga0059261_2075 0.57 -1.1
2,176,006 + Ga0059261_2075 0.57 -0.2
2,176,006 + Ga0059261_2075 0.57 +0.5
2,176,006 + Ga0059261_2075 0.57 +0.2
2,176,006 + Ga0059261_2075 0.57 +0.5
2,176,006 + Ga0059261_2075 0.57 -0.1
2,176,006 + Ga0059261_2075 0.57 +0.2
2,176,006 + Ga0059261_2075 0.57 +0.1
2,176,006 + +0.1
2,176,006 + Ga0059261_2075 0.57 +0.8
2,176,006 + Ga0059261_2075 0.57 -0.5
2,176,007 - Ga0059261_2075 0.57 -0.1
2,176,007 - Ga0059261_2075 0.57 -0.6
2,176,007 - Ga0059261_2075 0.57 +0.7
2,176,007 - Ga0059261_2075 0.57 +0.6
2,176,007 - Ga0059261_2075 0.57 +0.2
2,176,007 - Ga0059261_2075 0.57 +0.4
2,176,007 - Ga0059261_2075 0.57 -0.2
2,176,007 - Ga0059261_2075 0.57 +1.3
2,176,007 - Ga0059261_2075 0.57 +0.3
2,176,628 - +0.6
2,176,628 - +0.7
2,176,628 - -0.3
2,176,628 - -0.4
2,176,628 - +0.9
2,177,011 - Ga0059261_2076 0.69 +0.3
2,177,039 - Ga0059261_2076 0.78 +0.1
2,177,117 + -2.4
2,177,117 + -0.4
2,177,117 + +0.6
2,177,117 + +0.5
2,177,117 + +0.6
2,177,117 + -0.1
2,177,118 - -0.4
2,177,118 - -1.1
2,177,118 - +0.5
2,177,217 + Ga0059261_2077 0.29 -1.9
2,177,247 - Ga0059261_2077 0.37 +0.1
2,177,292 + Ga0059261_2077 0.50 -1.4
2,177,292 + Ga0059261_2077 0.50 -0.1
2,177,293 - Ga0059261_2077 0.50 -0.2
2,177,453 + -0.0
2,177,453 + +0.3
2,177,454 - -0.3
2,177,454 - +0.6
2,177,454 - +1.3
2,177,471 + +0.4
2,177,471 + +1.1
2,177,472 - +0.1
2,177,472 - +0.4
2,177,472 - +0.1
2,177,472 - +0.8
2,177,592 + Ga0059261_2078 0.18 +0.3
2,177,592 + Ga0059261_2078 0.18 -0.5
2,177,798 + Ga0059261_2078 0.49 +0.2
2,177,799 - Ga0059261_2078 0.49 -0.5
2,177,799 - Ga0059261_2078 0.49 -0.6
2,177,799 - Ga0059261_2078 0.49 +0.0
2,177,927 + Ga0059261_2078 0.68 +0.5
2,177,927 + Ga0059261_2078 0.68 -0.6
2,177,927 + Ga0059261_2078 0.68 +1.4
2,177,927 + Ga0059261_2078 0.68 +0.1
2,177,928 - Ga0059261_2078 0.68 -0.1
2,177,928 - Ga0059261_2078 0.68 +0.1
2,177,928 - Ga0059261_2078 0.68 +0.5
2,177,928 - Ga0059261_2078 0.68 +0.5

Or see this region's nucleotide sequence