Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1937

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1935 and Ga0059261_1936 are separated by 270 nucleotidesGa0059261_1936 and Ga0059261_1937 are separated by 108 nucleotidesGa0059261_1937 and Ga0059261_1938 are separated by 150 nucleotidesGa0059261_1938 and Ga0059261_1939 are separated by 3 nucleotides Ga0059261_1935: Ga0059261_1935 - Ferredoxin, at 2,045,274 to 2,045,615 _1935 Ga0059261_1936: Ga0059261_1936 - transcriptional regulator, CarD family, at 2,045,886 to 2,046,419 _1936 Ga0059261_1937: Ga0059261_1937 - Protein of unknown function (DUF2807), at 2,046,528 to 2,047,253 _1937 Ga0059261_1938: Ga0059261_1938 - Protein of unknown function (DUF2807), at 2,047,404 to 2,048,105 _1938 Ga0059261_1939: Ga0059261_1939 - putative phosphoesterase, at 2,048,109 to 2,048,771 _1939 Position (kb) 2046 2047 2048Strain fitness (log2 ratio) -2 -1 0 1 2at 2045.719 kb on + strandat 2045.739 kb on + strandat 2045.868 kb on + strandat 2046.393 kb on + strandat 2046.393 kb on + strandat 2046.393 kb on + strandat 2046.393 kb on + strandat 2046.394 kb on - strandat 2046.394 kb on - strandat 2046.394 kb on - strandat 2046.417 kb on + strandat 2046.418 kb on - strandat 2046.418 kb on - strandat 2046.418 kb on - strandat 2046.418 kb on - strandat 2046.548 kb on + strandat 2046.548 kb on + strandat 2046.548 kb on + strandat 2046.548 kb on + strandat 2046.922 kb on + strand, within Ga0059261_1937at 2047.106 kb on + strand, within Ga0059261_1937at 2047.106 kb on + strand, within Ga0059261_1937at 2047.106 kb on + strand, within Ga0059261_1937at 2047.107 kb on - strand, within Ga0059261_1937at 2047.798 kb on + strand, within Ga0059261_1938at 2047.798 kb on + strand, within Ga0059261_1938at 2047.799 kb on - strand, within Ga0059261_1938at 2047.799 kb on - strand, within Ga0059261_1938at 2047.799 kb on - strand, within Ga0059261_1938at 2047.896 kb on + strand, within Ga0059261_1938at 2047.896 kb on + strand, within Ga0059261_1938at 2047.896 kb on + strandat 2047.896 kb on + strand, within Ga0059261_1938at 2047.897 kb on - strand, within Ga0059261_1938at 2047.897 kb on - strand, within Ga0059261_1938at 2047.897 kb on - strand, within Ga0059261_1938at 2047.947 kb on + strand, within Ga0059261_1938at 2047.948 kb on + strand, within Ga0059261_1938at 2047.948 kb on + strand, within Ga0059261_1938at 2047.948 kb on + strand, within Ga0059261_1938at 2047.948 kb on + strand, within Ga0059261_1938at 2047.948 kb on + strand, within Ga0059261_1938at 2047.948 kb on + strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2047.949 kb on - strand, within Ga0059261_1938at 2048.002 kb on + strand, within Ga0059261_1938at 2048.103 kb on + strandat 2048.104 kb on - strandat 2048.104 kb on - strandat 2048.110 kb on + strandat 2048.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,045,719 + +0.1
2,045,739 + +1.5
2,045,868 + +0.7
2,046,393 + -0.7
2,046,393 + -0.4
2,046,393 + +1.0
2,046,393 + -0.6
2,046,394 - -0.8
2,046,394 - +0.3
2,046,394 - -1.1
2,046,417 + +2.2
2,046,418 - -2.3
2,046,418 - +0.2
2,046,418 - +0.9
2,046,418 - -1.9
2,046,548 + +0.1
2,046,548 + -0.7
2,046,548 + +0.7
2,046,548 + +0.2
2,046,922 + Ga0059261_1937 0.54 -0.3
2,047,106 + Ga0059261_1937 0.80 -0.8
2,047,106 + Ga0059261_1937 0.80 -0.8
2,047,106 + Ga0059261_1937 0.80 -0.8
2,047,107 - Ga0059261_1937 0.80 -0.7
2,047,798 + Ga0059261_1938 0.56 +0.7
2,047,798 + Ga0059261_1938 0.56 -0.1
2,047,799 - Ga0059261_1938 0.56 -0.0
2,047,799 - Ga0059261_1938 0.56 -0.2
2,047,799 - Ga0059261_1938 0.56 +2.5
2,047,896 + Ga0059261_1938 0.70 -0.4
2,047,896 + Ga0059261_1938 0.70 -0.0
2,047,896 + +1.1
2,047,896 + Ga0059261_1938 0.70 +0.6
2,047,897 - Ga0059261_1938 0.70 -1.1
2,047,897 - Ga0059261_1938 0.70 +0.1
2,047,897 - Ga0059261_1938 0.70 -2.1
2,047,947 + Ga0059261_1938 0.77 -0.1
2,047,948 + Ga0059261_1938 0.77 +1.3
2,047,948 + Ga0059261_1938 0.77 +0.5
2,047,948 + Ga0059261_1938 0.77 +1.1
2,047,948 + Ga0059261_1938 0.77 +0.3
2,047,948 + Ga0059261_1938 0.77 -0.4
2,047,948 + Ga0059261_1938 0.77 +0.7
2,047,949 - Ga0059261_1938 0.78 -0.9
2,047,949 - Ga0059261_1938 0.78 +0.1
2,047,949 - Ga0059261_1938 0.78 -0.0
2,047,949 - Ga0059261_1938 0.78 -0.1
2,047,949 - Ga0059261_1938 0.78 -0.1
2,047,949 - Ga0059261_1938 0.78 +0.5
2,047,949 - Ga0059261_1938 0.78 +0.6
2,047,949 - Ga0059261_1938 0.78 -0.3
2,047,949 - Ga0059261_1938 0.78 +1.6
2,047,949 - Ga0059261_1938 0.78 -0.5
2,047,949 - Ga0059261_1938 0.78 +0.6
2,047,949 - Ga0059261_1938 0.78 +0.5
2,048,002 + Ga0059261_1938 0.85 +0.5
2,048,103 + +0.2
2,048,104 - -0.4
2,048,104 - -0.3
2,048,110 + +0.6
2,048,111 - +0.4

Or see this region's nucleotide sequence