Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1730

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1727 and Ga0059261_1728 are separated by 14 nucleotidesGa0059261_1728 and Ga0059261_1729 overlap by 13 nucleotidesGa0059261_1729 and Ga0059261_1730 overlap by 4 nucleotidesGa0059261_1730 and Ga0059261_1731 overlap by 4 nucleotides Ga0059261_1727: Ga0059261_1727 - flagellar biosynthetic protein FliP, at 1,833,426 to 1,834,115 _1727 Ga0059261_1728: Ga0059261_1728 - Flagellar biosynthesis protein, FliO, at 1,834,130 to 1,834,534 _1728 Ga0059261_1729: Ga0059261_1729 - Surface presentation of antigens (SPOA), at 1,834,522 to 1,834,809 _1729 Ga0059261_1730: Ga0059261_1730 - Surface presentation of antigens (SPOA), at 1,834,806 to 1,835,573 _1730 Ga0059261_1731: Ga0059261_1731 - flagellar hook-basal body protein, at 1,835,570 to 1,836,748 _1731 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -1 0 1 2at 1833.966 kb on + strand, within Ga0059261_1727at 1833.966 kb on + strand, within Ga0059261_1727at 1833.967 kb on - strand, within Ga0059261_1727at 1833.967 kb on - strand, within Ga0059261_1727at 1833.967 kb on - strand, within Ga0059261_1727at 1834.119 kb on + strandat 1834.119 kb on + strandat 1834.119 kb on + strandat 1834.119 kb on + strandat 1834.120 kb on - strandat 1834.120 kb on - strandat 1834.120 kb on - strandat 1834.120 kb on - strandat 1834.120 kb on - strandat 1834.120 kb on - strandat 1834.203 kb on + strand, within Ga0059261_1728at 1834.203 kb on + strand, within Ga0059261_1728at 1834.203 kb on + strand, within Ga0059261_1728at 1834.203 kb on + strand, within Ga0059261_1728at 1834.203 kb on + strand, within Ga0059261_1728at 1834.203 kb on + strand, within Ga0059261_1728at 1834.203 kb on + strand, within Ga0059261_1728at 1834.203 kb on + strand, within Ga0059261_1728at 1834.204 kb on - strand, within Ga0059261_1728at 1834.204 kb on - strand, within Ga0059261_1728at 1834.204 kb on - strand, within Ga0059261_1728at 1834.204 kb on - strand, within Ga0059261_1728at 1834.404 kb on - strand, within Ga0059261_1728at 1834.404 kb on - strand, within Ga0059261_1728at 1834.404 kb on - strand, within Ga0059261_1728at 1834.404 kb on - strand, within Ga0059261_1728at 1834.404 kb on - strand, within Ga0059261_1728at 1834.404 kb on - strandat 1834.409 kb on - strand, within Ga0059261_1728at 1834.695 kb on + strand, within Ga0059261_1729at 1834.695 kb on + strand, within Ga0059261_1729at 1834.696 kb on - strand, within Ga0059261_1729at 1834.696 kb on - strand, within Ga0059261_1729at 1834.696 kb on - strandat 1834.696 kb on - strandat 1834.696 kb on - strand, within Ga0059261_1729at 1834.696 kb on - strand, within Ga0059261_1729at 1834.759 kb on + strand, within Ga0059261_1729at 1834.759 kb on + strand, within Ga0059261_1729at 1834.783 kb on + strandat 1834.784 kb on - strandat 1834.795 kb on + strandat 1834.796 kb on - strandat 1835.158 kb on + strand, within Ga0059261_1730at 1835.158 kb on + strand, within Ga0059261_1730at 1835.158 kb on + strand, within Ga0059261_1730at 1835.158 kb on + strand, within Ga0059261_1730at 1835.159 kb on - strand, within Ga0059261_1730at 1835.376 kb on + strand, within Ga0059261_1730at 1835.513 kb on + strandat 1835.699 kb on - strand, within Ga0059261_1731at 1835.878 kb on - strand, within Ga0059261_1731at 1835.878 kb on - strand, within Ga0059261_1731at 1835.878 kb on - strand, within Ga0059261_1731at 1835.878 kb on - strand, within Ga0059261_1731at 1836.022 kb on + strand, within Ga0059261_1731at 1836.022 kb on + strand, within Ga0059261_1731at 1836.022 kb on + strand, within Ga0059261_1731at 1836.023 kb on - strand, within Ga0059261_1731at 1836.045 kb on - strand, within Ga0059261_1731at 1836.046 kb on + strand, within Ga0059261_1731at 1836.047 kb on - strand, within Ga0059261_1731at 1836.217 kb on + strand, within Ga0059261_1731at 1836.217 kb on + strand, within Ga0059261_1731at 1836.217 kb on + strand, within Ga0059261_1731at 1836.217 kb on + strand, within Ga0059261_1731at 1836.218 kb on - strand, within Ga0059261_1731at 1836.218 kb on - strand, within Ga0059261_1731at 1836.218 kb on - strand, within Ga0059261_1731at 1836.218 kb on - strand, within Ga0059261_1731at 1836.228 kb on + strand, within Ga0059261_1731at 1836.228 kb on + strand, within Ga0059261_1731at 1836.229 kb on - strand, within Ga0059261_1731at 1836.229 kb on - strand, within Ga0059261_1731at 1836.229 kb on - strand, within Ga0059261_1731at 1836.287 kb on + strand, within Ga0059261_1731at 1836.287 kb on + strand, within Ga0059261_1731at 1836.287 kb on + strand, within Ga0059261_1731at 1836.287 kb on + strand, within Ga0059261_1731at 1836.288 kb on - strand, within Ga0059261_1731at 1836.288 kb on - strand, within Ga0059261_1731at 1836.288 kb on - strand, within Ga0059261_1731at 1836.288 kb on - strand, within Ga0059261_1731at 1836.288 kb on - strand, within Ga0059261_1731at 1836.366 kb on + strand, within Ga0059261_1731at 1836.367 kb on - strand, within Ga0059261_1731at 1836.367 kb on - strand, within Ga0059261_1731at 1836.367 kb on - strand, within Ga0059261_1731at 1836.426 kb on + strand, within Ga0059261_1731at 1836.427 kb on + strand, within Ga0059261_1731at 1836.427 kb on + strand, within Ga0059261_1731at 1836.427 kb on + strand, within Ga0059261_1731at 1836.427 kb on + strand, within Ga0059261_1731at 1836.427 kb on + strand, within Ga0059261_1731at 1836.428 kb on - strand, within Ga0059261_1731at 1836.428 kb on - strand, within Ga0059261_1731at 1836.428 kb on - strandat 1836.428 kb on - strand, within Ga0059261_1731at 1836.429 kb on + strand, within Ga0059261_1731at 1836.429 kb on + strand, within Ga0059261_1731at 1836.429 kb on + strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731at 1836.430 kb on - strand, within Ga0059261_1731

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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1,833,966 + Ga0059261_1727 0.78 -1.1
1,833,966 + Ga0059261_1727 0.78 -0.1
1,833,967 - Ga0059261_1727 0.78 -1.5
1,833,967 - Ga0059261_1727 0.78 -0.5
1,833,967 - Ga0059261_1727 0.78 +1.1
1,834,119 + +0.5
1,834,119 + -0.9
1,834,119 + -0.2
1,834,119 + +0.0
1,834,120 - +0.4
1,834,120 - -0.1
1,834,120 - -1.0
1,834,120 - -0.5
1,834,120 - -1.0
1,834,120 - -0.5
1,834,203 + Ga0059261_1728 0.18 -0.3
1,834,203 + Ga0059261_1728 0.18 -0.5
1,834,203 + Ga0059261_1728 0.18 -1.3
1,834,203 + Ga0059261_1728 0.18 +0.3
1,834,203 + Ga0059261_1728 0.18 +0.2
1,834,203 + Ga0059261_1728 0.18 +0.2
1,834,203 + Ga0059261_1728 0.18 -1.1
1,834,203 + Ga0059261_1728 0.18 +1.2
1,834,204 - Ga0059261_1728 0.18 +0.7
1,834,204 - Ga0059261_1728 0.18 +0.3
1,834,204 - Ga0059261_1728 0.18 +0.0
1,834,204 - Ga0059261_1728 0.18 -0.7
1,834,404 - Ga0059261_1728 0.68 +1.8
1,834,404 - Ga0059261_1728 0.68 -0.7
1,834,404 - Ga0059261_1728 0.68 -0.7
1,834,404 - Ga0059261_1728 0.68 -0.1
1,834,404 - Ga0059261_1728 0.68 -0.2
1,834,404 - +1.1
1,834,409 - Ga0059261_1728 0.69 -1.6
1,834,695 + Ga0059261_1729 0.60 -0.6
1,834,695 + Ga0059261_1729 0.60 -0.4
1,834,696 - Ga0059261_1729 0.60 -0.5
1,834,696 - Ga0059261_1729 0.60 -0.1
1,834,696 - +0.1
1,834,696 - -0.3
1,834,696 - Ga0059261_1729 0.60 -0.7
1,834,696 - Ga0059261_1729 0.60 +0.8
1,834,759 + Ga0059261_1729 0.82 -0.5
1,834,759 + Ga0059261_1729 0.82 +0.3
1,834,783 + +0.0
1,834,784 - +0.7
1,834,795 + -0.6
1,834,796 - -0.3
1,835,158 + Ga0059261_1730 0.46 +0.5
1,835,158 + Ga0059261_1730 0.46 +0.3
1,835,158 + Ga0059261_1730 0.46 -1.0
1,835,158 + Ga0059261_1730 0.46 +0.6
1,835,159 - Ga0059261_1730 0.46 -0.3
1,835,376 + Ga0059261_1730 0.74 +0.4
1,835,513 + +0.6
1,835,699 - Ga0059261_1731 0.11 +0.2
1,835,878 - Ga0059261_1731 0.26 -0.9
1,835,878 - Ga0059261_1731 0.26 -0.1
1,835,878 - Ga0059261_1731 0.26 -0.9
1,835,878 - Ga0059261_1731 0.26 -0.4
1,836,022 + Ga0059261_1731 0.38 +0.0
1,836,022 + Ga0059261_1731 0.38 +0.7
1,836,022 + Ga0059261_1731 0.38 +0.4
1,836,023 - Ga0059261_1731 0.38 -0.1
1,836,045 - Ga0059261_1731 0.40 -0.2
1,836,046 + Ga0059261_1731 0.40 -0.3
1,836,047 - Ga0059261_1731 0.40 +0.2
1,836,217 + Ga0059261_1731 0.55 -0.7
1,836,217 + Ga0059261_1731 0.55 -0.2
1,836,217 + Ga0059261_1731 0.55 -0.5
1,836,217 + Ga0059261_1731 0.55 -0.5
1,836,218 - Ga0059261_1731 0.55 +0.1
1,836,218 - Ga0059261_1731 0.55 -0.9
1,836,218 - Ga0059261_1731 0.55 +1.1
1,836,218 - Ga0059261_1731 0.55 +0.1
1,836,228 + Ga0059261_1731 0.56 -0.0
1,836,228 + Ga0059261_1731 0.56 -0.3
1,836,229 - Ga0059261_1731 0.56 -1.6
1,836,229 - Ga0059261_1731 0.56 -0.1
1,836,229 - Ga0059261_1731 0.56 +0.4
1,836,287 + Ga0059261_1731 0.61 +1.0
1,836,287 + Ga0059261_1731 0.61 -0.3
1,836,287 + Ga0059261_1731 0.61 +0.1
1,836,287 + Ga0059261_1731 0.61 -0.3
1,836,288 - Ga0059261_1731 0.61 +0.1
1,836,288 - Ga0059261_1731 0.61 -0.9
1,836,288 - Ga0059261_1731 0.61 +0.7
1,836,288 - Ga0059261_1731 0.61 +0.6
1,836,288 - Ga0059261_1731 0.61 -0.4
1,836,366 + Ga0059261_1731 0.68 -0.7
1,836,367 - Ga0059261_1731 0.68 +0.1
1,836,367 - Ga0059261_1731 0.68 +0.2
1,836,367 - Ga0059261_1731 0.68 +0.6
1,836,426 + Ga0059261_1731 0.73 -0.7
1,836,427 + Ga0059261_1731 0.73 -0.1
1,836,427 + Ga0059261_1731 0.73 -0.5
1,836,427 + Ga0059261_1731 0.73 -0.4
1,836,427 + Ga0059261_1731 0.73 -0.6
1,836,427 + Ga0059261_1731 0.73 -0.1
1,836,428 - Ga0059261_1731 0.73 -0.2
1,836,428 - Ga0059261_1731 0.73 +0.0
1,836,428 - -0.3
1,836,428 - Ga0059261_1731 0.73 -0.1
1,836,429 + Ga0059261_1731 0.73 +0.5
1,836,429 + Ga0059261_1731 0.73 +0.2
1,836,429 + Ga0059261_1731 0.73 -1.4
1,836,430 - Ga0059261_1731 0.73 +0.2
1,836,430 - Ga0059261_1731 0.73 +0.4
1,836,430 - Ga0059261_1731 0.73 +0.2
1,836,430 - Ga0059261_1731 0.73 -0.8
1,836,430 - Ga0059261_1731 0.73 -0.0
1,836,430 - Ga0059261_1731 0.73 -0.3
1,836,430 - Ga0059261_1731 0.73 +0.3
1,836,430 - Ga0059261_1731 0.73 -0.7
1,836,430 - Ga0059261_1731 0.73 +0.7
1,836,430 - Ga0059261_1731 0.73 -0.1
1,836,430 - Ga0059261_1731 0.73 +1.5
1,836,430 - Ga0059261_1731 0.73 +0.2

Or see this region's nucleotide sequence