Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0875

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0873 and Ga0059261_0874 are separated by 160 nucleotidesGa0059261_0874 and Ga0059261_0875 are separated by 39 nucleotidesGa0059261_0875 and Ga0059261_0876 are separated by 291 nucleotides Ga0059261_0873: Ga0059261_0873 - nucleoside diphosphate kinase (EC 2.7.4.6), at 912,867 to 913,289 _0873 Ga0059261_0874: Ga0059261_0874 - DNA polymerase III, chi subunit (EC 2.7.7.7), at 913,450 to 913,890 _0874 Ga0059261_0875: Ga0059261_0875 - Leucyl aminopeptidase, at 913,930 to 915,405 _0875 Ga0059261_0876: Ga0059261_0876 - Organic solvent tolerance protein OstA, at 915,697 to 918,006 _0876 Position (kb) 913 914 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 913.311 kb on - strandat 913.336 kb on - strandat 913.336 kb on - strandat 913.336 kb on - strandat 913.403 kb on - strandat 913.403 kb on - strandat 913.403 kb on - strandat 913.403 kb on - strandat 913.440 kb on + strandat 913.440 kb on + strandat 913.440 kb on + strandat 913.440 kb on + strandat 913.441 kb on - strandat 913.441 kb on - strandat 913.441 kb on - strandat 913.451 kb on + strandat 913.451 kb on + strandat 913.451 kb on + strandat 913.451 kb on + strandat 913.452 kb on - strandat 913.452 kb on - strandat 913.452 kb on - strandat 914.001 kb on - strandat 914.001 kb on - strandat 914.001 kb on - strandat 914.001 kb on - strandat 914.001 kb on - strandat 914.169 kb on - strand, within Ga0059261_0875at 914.169 kb on - strand, within Ga0059261_0875at 914.916 kb on - strand, within Ga0059261_0875at 915.452 kb on - strandat 915.452 kb on - strandat 915.452 kb on - strandat 915.480 kb on + strandat 915.480 kb on + strandat 915.481 kb on - strandat 915.481 kb on - strandat 915.481 kb on - strandat 915.481 kb on - strandat 915.692 kb on + strandat 915.692 kb on + strandat 915.693 kb on - strandat 915.693 kb on - strandat 915.705 kb on + strandat 915.748 kb on + strandat 915.748 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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913,311 - +0.8
913,336 - +0.3
913,336 - -0.2
913,336 - +0.3
913,403 - +0.8
913,403 - -1.2
913,403 - -0.8
913,403 - +0.8
913,440 + -0.4
913,440 + +0.4
913,440 + -0.0
913,440 + -0.2
913,441 - +0.2
913,441 - -0.5
913,441 - +2.4
913,451 + +0.5
913,451 + +0.6
913,451 + -0.0
913,451 + -0.0
913,452 - -1.0
913,452 - -0.6
913,452 - +0.5
914,001 - -0.0
914,001 - +1.0
914,001 - -0.6
914,001 - -0.5
914,001 - -0.7
914,169 - Ga0059261_0875 0.16 -1.9
914,169 - Ga0059261_0875 0.16 -2.9
914,916 - Ga0059261_0875 0.67 -0.8
915,452 - -1.3
915,452 - +0.3
915,452 - +0.3
915,480 + -0.4
915,480 + -0.9
915,481 - +1.3
915,481 - -0.2
915,481 - +0.7
915,481 - +0.0
915,692 + -0.4
915,692 + -0.4
915,693 - -1.5
915,693 - +0.7
915,705 + -0.3
915,748 + -0.9
915,748 + -0.6

Or see this region's nucleotide sequence