Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03090 and CCNA_03091 are separated by 279 nucleotides CCNA_03091 and CCNA_03092 are separated by 100 nucleotides
CCNA_03090: CCNA_03090 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, at 3,239,258 to 3,240,220
_03090
CCNA_03091: CCNA_03091 - redox cell cycle regulatory protein NstA, at 3,240,500 to 3,240,700
_03091
CCNA_03092: CCNA_03092 - cytochrome P450 family protein, at 3,240,801 to 3,242,177
_03092
Position (kb)
3240
3241 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3240.224 kb on - strand at 3240.287 kb on - strand at 3240.360 kb on + strand at 3240.380 kb on + strand at 3240.393 kb on + strand at 3240.398 kb on + strand at 3240.398 kb on + strand at 3240.398 kb on + strand at 3240.398 kb on + strand at 3240.401 kb on - strand at 3240.406 kb on - strand at 3240.406 kb on - strand at 3240.406 kb on - strand at 3240.464 kb on - strand at 3240.475 kb on + strand at 3240.480 kb on + strand at 3240.483 kb on - strand at 3240.488 kb on - strand at 3240.494 kb on + strand at 3240.502 kb on - strand at 3240.502 kb on - strand at 3240.505 kb on + strand at 3240.514 kb on - strand at 3240.517 kb on + strand at 3240.550 kb on - strand, within CCNA_03091 at 3240.640 kb on + strand, within CCNA_03091 at 3240.695 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.784 kb on + strand at 3240.833 kb on - strand at 3240.856 kb on - strand at 3240.860 kb on + strand at 3240.871 kb on + strand at 3240.920 kb on + strand at 3240.961 kb on - strand, within CCNA_03092 at 3240.963 kb on + strand, within CCNA_03092 at 3240.969 kb on - strand, within CCNA_03092 at 3240.971 kb on + strand, within CCNA_03092 at 3241.023 kb on + strand, within CCNA_03092 at 3241.051 kb on + strand, within CCNA_03092 at 3241.079 kb on - strand, within CCNA_03092 at 3241.092 kb on + strand, within CCNA_03092 at 3241.105 kb on - strand, within CCNA_03092 at 3241.110 kb on + strand, within CCNA_03092 at 3241.117 kb on - strand, within CCNA_03092 at 3241.117 kb on - strand, within CCNA_03092 at 3241.133 kb on - strand, within CCNA_03092 at 3241.159 kb on - strand, within CCNA_03092 at 3241.181 kb on + strand, within CCNA_03092 at 3241.240 kb on - strand, within CCNA_03092 at 3241.240 kb on - strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.254 kb on + strand, within CCNA_03092 at 3241.262 kb on - strand, within CCNA_03092 at 3241.262 kb on - strand, within CCNA_03092 at 3241.264 kb on + strand, within CCNA_03092 at 3241.281 kb on + strand, within CCNA_03092 at 3241.286 kb on - strand, within CCNA_03092 at 3241.288 kb on + strand, within CCNA_03092 at 3241.289 kb on - strand, within CCNA_03092 at 3241.317 kb on - strand, within CCNA_03092 at 3241.333 kb on + strand, within CCNA_03092 at 3241.333 kb on + strand, within CCNA_03092 at 3241.341 kb on - strand, within CCNA_03092 at 3241.341 kb on - strand, within CCNA_03092 at 3241.360 kb on + strand, within CCNA_03092 at 3241.368 kb on + strand, within CCNA_03092 at 3241.369 kb on + strand, within CCNA_03092 at 3241.457 kb on - strand, within CCNA_03092 at 3241.480 kb on - strand, within CCNA_03092 at 3241.496 kb on + strand, within CCNA_03092 at 3241.504 kb on - strand, within CCNA_03092 at 3241.504 kb on - strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.526 kb on - strand, within CCNA_03092 at 3241.587 kb on - strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.624 kb on + strand, within CCNA_03092 at 3241.624 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.645 kb on - strand, within CCNA_03092 at 3241.645 kb on - strand, within CCNA_03092 at 3241.645 kb on - strand, within CCNA_03092 at 3241.685 kb on + strand, within CCNA_03092 at 3241.693 kb on - strand, within CCNA_03092 at 3241.698 kb on + strand, within CCNA_03092
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 3,240,224 - +0.9 3,240,287 - -0.2 3,240,360 + -2.3 3,240,380 + +0.2 3,240,393 + +0.3 3,240,398 + +0.9 3,240,398 + -0.1 3,240,398 + +0.1 3,240,398 + +0.5 3,240,401 - -0.9 3,240,406 - -2.8 3,240,406 - -1.4 3,240,406 - +0.8 3,240,464 - -1.2 3,240,475 + +2.2 3,240,480 + +0.9 3,240,483 - -1.7 3,240,488 - +0.3 3,240,494 + +1.4 3,240,502 - -0.3 3,240,502 - -1.4 3,240,505 + +1.6 3,240,514 - +0.0 3,240,517 + +1.1 3,240,550 - CCNA_03091 0.25 -1.4 3,240,640 + CCNA_03091 0.70 -0.5 3,240,695 + -1.2 3,240,776 + -0.2 3,240,776 + +1.1 3,240,776 + +0.9 3,240,776 + +1.0 3,240,776 + +1.7 3,240,776 + +1.3 3,240,784 + +1.0 3,240,833 - +0.2 3,240,856 - -0.6 3,240,860 + -0.7 3,240,871 + +1.4 3,240,920 + -0.3 3,240,961 - CCNA_03092 0.12 -2.0 3,240,963 + CCNA_03092 0.12 -1.0 3,240,969 - CCNA_03092 0.12 +1.0 3,240,971 + CCNA_03092 0.12 +0.6 3,241,023 + CCNA_03092 0.16 +0.1 3,241,051 + CCNA_03092 0.18 +0.7 3,241,079 - CCNA_03092 0.20 -1.8 3,241,092 + CCNA_03092 0.21 +0.2 3,241,105 - CCNA_03092 0.22 -0.5 3,241,110 + CCNA_03092 0.22 -0.7 3,241,117 - CCNA_03092 0.23 +1.5 3,241,117 - CCNA_03092 0.23 -1.1 3,241,133 - CCNA_03092 0.24 -0.5 3,241,159 - CCNA_03092 0.26 -0.7 3,241,181 + CCNA_03092 0.28 +0.1 3,241,240 - CCNA_03092 0.32 -0.4 3,241,240 - CCNA_03092 0.32 -0.8 3,241,247 + CCNA_03092 0.32 -0.2 3,241,247 + CCNA_03092 0.32 +0.9 3,241,247 + CCNA_03092 0.32 -2.8 3,241,247 + CCNA_03092 0.32 +2.3 3,241,247 + CCNA_03092 0.32 -0.4 3,241,254 + CCNA_03092 0.33 -1.3 3,241,262 - CCNA_03092 0.33 +1.0 3,241,262 - CCNA_03092 0.33 +0.4 3,241,264 + CCNA_03092 0.34 -0.8 3,241,281 + CCNA_03092 0.35 -1.6 3,241,286 - CCNA_03092 0.35 -0.7 3,241,288 + CCNA_03092 0.35 -0.8 3,241,289 - CCNA_03092 0.35 -0.5 3,241,317 - CCNA_03092 0.37 +1.6 3,241,333 + CCNA_03092 0.39 -1.8 3,241,333 + CCNA_03092 0.39 +0.1 3,241,341 - CCNA_03092 0.39 -1.4 3,241,341 - CCNA_03092 0.39 -2.8 3,241,360 + CCNA_03092 0.41 -1.6 3,241,368 + CCNA_03092 0.41 +1.0 3,241,369 + CCNA_03092 0.41 -0.2 3,241,457 - CCNA_03092 0.48 +1.0 3,241,480 - CCNA_03092 0.49 +1.5 3,241,496 + CCNA_03092 0.50 +0.9 3,241,504 - CCNA_03092 0.51 +1.3 3,241,504 - CCNA_03092 0.51 -0.5 3,241,518 + CCNA_03092 0.52 +0.2 3,241,518 + CCNA_03092 0.52 +1.4 3,241,518 + CCNA_03092 0.52 -0.3 3,241,518 + CCNA_03092 0.52 -0.5 3,241,518 + CCNA_03092 0.52 +0.1 3,241,526 - CCNA_03092 0.53 +0.3 3,241,587 - CCNA_03092 0.57 +0.3 3,241,589 + CCNA_03092 0.57 +0.1 3,241,589 + CCNA_03092 0.57 -0.3 3,241,589 + CCNA_03092 0.57 +0.6 3,241,589 + CCNA_03092 0.57 -1.2 3,241,589 + CCNA_03092 0.57 -0.3 3,241,589 + CCNA_03092 0.57 -1.0 3,241,589 + CCNA_03092 0.57 +0.7 3,241,597 - CCNA_03092 0.58 -0.4 3,241,597 - CCNA_03092 0.58 -2.8 3,241,597 - CCNA_03092 0.58 +1.1 3,241,597 - CCNA_03092 0.58 +0.1 3,241,624 + CCNA_03092 0.60 -0.4 3,241,624 + CCNA_03092 0.60 -2.8 3,241,637 + CCNA_03092 0.61 -0.6 3,241,637 + CCNA_03092 0.61 -0.1 3,241,637 + CCNA_03092 0.61 -0.3 3,241,637 + CCNA_03092 0.61 -1.0 3,241,645 - CCNA_03092 0.61 -2.2 3,241,645 - CCNA_03092 0.61 +0.0 3,241,645 - CCNA_03092 0.61 -1.1 3,241,685 + CCNA_03092 0.64 -0.2 3,241,693 - CCNA_03092 0.65 +1.0 3,241,698 + CCNA_03092 0.65 -1.2
Or see this region's nucleotide sequence