Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02439

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
2,578,909	-		CCNA_02438	0.10	-2.2
2,578,928	-		CCNA_02438	0.12	-1.7
2,578,970	+		CCNA_02438	0.17	-0.1
2,578,978	-		CCNA_02438	0.17	-0.5
2,579,050	+		CCNA_02438	0.25	+0.4
2,579,055	+		CCNA_02438	0.25	+1.0
2,579,067	+		CCNA_02438	0.26	-0.9
2,579,068	-		CCNA_02438	0.27	+0.8
2,579,133	-		CCNA_02438	0.33	-1.0
2,579,140	-		CCNA_02438	0.34	-0.4
2,579,155	-		CCNA_02438	0.35	-0.4
2,579,170	+		CCNA_02438	0.37	-1.3
2,579,170	+		CCNA_02438	0.37	-0.9
2,579,170	+		CCNA_02438	0.37	+0.5
2,579,170	+		CCNA_02438	0.37	+1.4
2,579,170	+		CCNA_02438	0.37	-0.8
2,579,170	+		CCNA_02438	0.37	+0.6
2,579,178	-		CCNA_02438	0.38	-0.0
2,579,178	-		CCNA_02438	0.38	-1.2
2,579,178	-		CCNA_02438	0.38	-1.3
2,579,178	-		CCNA_02438	0.38	+0.1
2,579,178	-		CCNA_02438	0.38	+1.3
2,579,178	-		CCNA_02438	0.38	+0.1
2,579,178	-		CCNA_02438	0.38	-1.2
2,579,178	-		CCNA_02438	0.38	-1.0
2,579,178	-		CCNA_02438	0.38	-1.7
2,579,178	-		CCNA_02438	0.38	-0.9
2,579,178	-		CCNA_02438	0.38	+1.8
2,579,180	+		CCNA_02438	0.38	-0.1
2,579,183	-		CCNA_02438	0.38	+0.1
2,579,188	-		CCNA_02438	0.39	-1.8
2,579,213	-		CCNA_02438	0.41	-0.7
2,579,226	+		CCNA_02438	0.43	-1.1
2,579,234	-		CCNA_02438	0.44	+0.6
2,579,234	-		CCNA_02438	0.44	-0.9
2,579,274	+		CCNA_02438	0.48	-1.1
2,579,301	+		CCNA_02438	0.50	-0.4
2,579,306	+		CCNA_02438	0.51	-0.3
2,579,309	-		CCNA_02438	0.51	-1.5
2,579,345	+		CCNA_02438	0.55	-0.6
2,579,352	+		CCNA_02438	0.56	+0.3
2,579,352	+		CCNA_02438	0.56	-1.5
2,579,360	-		CCNA_02438	0.57	-1.7
2,579,360	-		CCNA_02438	0.57	-1.5
2,579,360	-		CCNA_02438	0.57	+0.4
2,579,371	+		CCNA_02438	0.58	+0.4
2,579,379	-		CCNA_02438	0.58	+1.0
2,579,390	-		CCNA_02438	0.60	-1.2
2,579,397	-		CCNA_02438	0.60	+0.5
2,579,398	-		CCNA_02438	0.60	+1.0
2,579,406	+		CCNA_02438	0.61	+0.7
2,579,406	+		CCNA_02438	0.61	-2.1
2,579,411	+		CCNA_02438	0.62	-0.7
2,579,411	+		CCNA_02438	0.62	+0.4
2,579,411	+		CCNA_02438	0.62	+0.5
2,579,411	+		CCNA_02438	0.62	+0.0
2,579,411	+		CCNA_02438	0.62	+0.9
2,579,419	-		CCNA_02438	0.63	-1.2
2,579,419	-		CCNA_02438	0.63	-1.8
2,579,419	-		CCNA_02438	0.63	-1.4
2,579,419	-		CCNA_02438	0.63	-0.9
2,579,449	-		CCNA_02438	0.66	+0.2
2,579,460	+		CCNA_02438	0.67	+1.3
2,579,460	+		CCNA_02438	0.67	-0.7
2,579,460	+		CCNA_02438	0.67	-2.4
2,579,460	+		CCNA_02438	0.67	-1.5
2,579,460	+		CCNA_02438	0.67	+0.1
2,579,460	+		CCNA_02438	0.67	+0.9
2,579,462	+		CCNA_02438	0.67	+0.7
2,579,468	-		CCNA_02438	0.68	+1.3
2,579,468	-		CCNA_02438	0.68	-1.3
2,579,470	+		CCNA_02438	0.68	+1.1
2,579,485	+		CCNA_02438	0.69	-0.3
2,579,493	-		CCNA_02438	0.70	+0.5
2,579,548	-		CCNA_02438	0.76	-0.9
2,579,568	+		CCNA_02438	0.78	+0.6
2,579,609	-		CCNA_02438	0.82	-0.4
2,579,622	-		CCNA_02438	0.83	-2.0
2,579,626	+		CCNA_02438	0.84	-2.9
2,579,627	-		CCNA_02438	0.84	-0.1
2,579,634	-		CCNA_02438	0.85	-0.9
2,579,634	-		CCNA_02438	0.85	-0.3
2,579,635	+		CCNA_02438	0.85	+1.2
2,579,641	-		CCNA_02438	0.85	-0.1
2,579,641	-		CCNA_02438	0.85	+0.7
2,579,693	+				+0.6
2,579,693	+				+0.9
2,579,701	-				+2.9
2,579,701	-				-2.2
2,579,713	-				-0.3
2,579,714	-				+0.1
2,579,714	-				-0.1
2,579,722	-				-0.3
2,579,760	+				-0.6
2,579,760	+				-0.7
2,579,760	+				+1.7
2,579,760	+				-0.1
2,579,760	+				-1.8
2,579,760	+				-0.4
2,579,760	+				-0.2
2,579,768	-				+0.9
2,579,768	-				+0.1
2,579,768	-				+1.9
2,579,768	-				+0.5
2,579,878	+				-0.6
2,579,878	+				+1.5
2,579,958	-				+0.2
2,579,960	+				-0.9
2,579,986	+				-1.7
2,580,030	-				-0.5
2,580,040	+		CCNA_02439	0.10	-1.6
2,580,040	+		CCNA_02439	0.10	-1.0
2,580,048	-				+1.3
2,580,118	-		CCNA_02439	0.16	-1.2
2,580,134	+		CCNA_02439	0.18	-0.3
2,580,134	+		CCNA_02439	0.18	-0.1
2,580,142	-		CCNA_02439	0.18	+0.3
2,580,142	-		CCNA_02439	0.18	-0.4
2,580,142	-		CCNA_02439	0.18	+0.0
2,580,171	+		CCNA_02439	0.21	-2.2
2,580,173	+		CCNA_02439	0.21	+2.0
2,580,184	-		CCNA_02439	0.22	-2.2
2,580,193	+		CCNA_02439	0.22	-0.9
2,580,213	+		CCNA_02439	0.24	-1.8
2,580,216	-		CCNA_02439	0.24	+0.8
2,580,226	+		CCNA_02439	0.25	-0.7
2,580,233	-		CCNA_02439	0.25	+0.5
2,580,254	+		CCNA_02439	0.27	-1.2
2,580,278	+		CCNA_02439	0.29	-1.3
2,580,283	+		CCNA_02439	0.29	-0.1
2,580,310	+		CCNA_02439	0.31	-1.1
2,580,311	-		CCNA_02439	0.31	-2.0
2,580,383	-		CCNA_02439	0.37	+0.2
2,580,383	-		CCNA_02439	0.37	-2.3
2,580,385	-		CCNA_02439	0.37	+0.1
2,580,385	-		CCNA_02439	0.37	-0.4
2,580,414	+		CCNA_02439	0.39	-0.4
2,580,422	-		CCNA_02439	0.40	+0.4
2,580,432	-		CCNA_02439	0.41	+0.0
2,580,491	-		CCNA_02439	0.45	-1.2
2,580,511	-		CCNA_02439	0.47	-1.4
2,580,545	+		CCNA_02439	0.49	-0.5
2,580,553	-		CCNA_02439	0.50	-0.9
2,580,553	-		CCNA_02439	0.50	-1.7
2,580,553	-		CCNA_02439	0.50	+1.3
2,580,733	+		CCNA_02439	0.64	-1.9
2,580,799	+		CCNA_02439	0.69	-1.0
2,580,806	+		CCNA_02439	0.70	+0.2
2,580,814	-		CCNA_02439	0.70	+3.0
2,580,824	-		CCNA_02439	0.71	+0.7
2,580,831	-		CCNA_02439	0.72	-2.4
2,580,836	-		CCNA_02439	0.72	-1.0
2,580,863	+		CCNA_02439	0.74	+0.3
2,580,864	-		CCNA_02439	0.74	+0.4
2,580,876	-		CCNA_02439	0.75	-1.1
2,580,897	+		CCNA_02439	0.77	-0.4
2,580,920	-		CCNA_02439	0.78	-1.3
2,580,920	-		CCNA_02439	0.78	-0.3
2,580,920	-		CCNA_02439	0.78	+1.4
2,580,936	-		CCNA_02439	0.80	+0.0
2,580,938	+		CCNA_02439	0.80	+0.4
2,580,946	-		CCNA_02439	0.81	-1.7
2,580,946	-		CCNA_02439	0.81	-0.4
2,580,946	-		CCNA_02439	0.81	+3.6
2,580,946	-		CCNA_02439	0.81	+0.6
2,580,946	-		CCNA_02439	0.81	-0.2
2,580,950	+		CCNA_02439	0.81	-2.6
2,580,950	+		CCNA_02439	0.81	-0.5
2,580,965	+		CCNA_02439	0.82	-0.9
2,580,983	+		CCNA_02439	0.83	-2.5
2,581,012	-		CCNA_02439	0.86	-0.6
2,581,017	-		CCNA_02439	0.86	-0.4
2,581,041	+		CCNA_02439	0.88	-1.5
2,581,042	+		CCNA_02439	0.88	-0.2
2,581,050	-		CCNA_02439	0.89	+0.3
2,581,064	+		CCNA_02439	0.90	-1.4
2,581,064	+		CCNA_02439	0.90	+0.3
2,581,129	-				-1.6
2,581,129	-				-1.7
2,581,129	-				+3.6
2,581,149	+				-1.0
2,581,171	+				-1.0
2,581,179	-				-1.7
2,581,179	-				-0.8
2,581,179	-				+0.2
2,581,186	-				-1.2
2,581,188	+				+1.7
2,581,200	-				-1.8
2,581,204	+				+0.5
2,581,206	+				+1.8
2,581,207	-				+1.1
2,581,250	+				-0.9
2,581,267	+				-2.3
2,581,278	+				+0.8
2,581,304	-				-1.3
2,581,304	-				-0.2
2,581,310	+				+0.6
2,581,315	+		CCNA_02440	0.10	-0.6
2,581,318	-		CCNA_02440	0.11	-0.5
2,581,319	+		CCNA_02440	0.11	+1.6
2,581,324	+		CCNA_02440	0.11	-0.6
2,581,332	-		CCNA_02440	0.12	-0.8
2,581,379	+		CCNA_02440	0.17	-1.7
2,581,387	-		CCNA_02440	0.17	-1.2
2,581,554	+		CCNA_02440	0.33	-1.4
2,581,579	-		CCNA_02440	0.36	-1.7
2,581,631	+		CCNA_02440	0.41	-1.7
2,581,631	+		CCNA_02440	0.41	+0.7
2,581,633	+		CCNA_02440	0.41	-2.0
2,581,639	-		CCNA_02440	0.41	-1.9
2,581,667	-		CCNA_02440	0.44	-0.9
2,581,667	-		CCNA_02440	0.44	-1.0
2,581,667	-		CCNA_02440	0.44	-0.8
2,581,718	+		CCNA_02440	0.49	+0.8
2,581,726	-		CCNA_02440	0.50	+1.2
2,581,730	-		CCNA_02440	0.50	+0.3
2,581,755	+		CCNA_02440	0.53	-0.1
2,581,769	+		CCNA_02440	0.54	+0.3
2,581,835	+		CCNA_02440	0.60	+0.6
2,581,843	-		CCNA_02440	0.61	+0.6
2,581,844	-		CCNA_02440	0.61	-0.4
2,581,870	+		CCNA_02440	0.64	-0.2
2,581,870	+		CCNA_02440	0.64	+0.4
2,581,873	+		CCNA_02440	0.64	+0.7
2,581,873	+		CCNA_02440	0.64	+0.7
2,581,882	+		CCNA_02440	0.65	+0.3
2,581,886	+		CCNA_02440	0.65	-0.0
2,582,024	+		CCNA_02440	0.78	+0.5
2,582,026	-		CCNA_02440	0.79	+1.3
2,582,032	-		CCNA_02440	0.79	-1.1
2,582,128	-		CCNA_02440	0.88	-1.9
2,582,155	-				-0.3