Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01588

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
1,705,817	+		CCNA_01587	0.35	+1.0
1,705,820	+		CCNA_01587	0.35	+1.1
1,705,825	-		CCNA_01587	0.36	+0.3
1,705,830	-		CCNA_01587	0.36	+0.8
1,705,842	+		CCNA_01587	0.37	-0.7
1,705,864	-		CCNA_01587	0.38	+0.5
1,705,884	+		CCNA_01587	0.40	-0.3
1,705,956	-		CCNA_01587	0.45	+0.1
1,705,956	-		CCNA_01587	0.45	+0.3
1,705,978	-		CCNA_01587	0.46	-2.3
1,705,979	+		CCNA_01587	0.46	+0.7
1,706,029	+		CCNA_01587	0.50	+0.8
1,706,122	+		CCNA_01587	0.56	-0.4
1,706,153	-		CCNA_01587	0.58	+0.7
1,706,240	-		CCNA_01587	0.64	-0.7
1,706,273	-		CCNA_01587	0.67	-0.4
1,706,301	+		CCNA_01587	0.69	+0.1
1,706,302	-		CCNA_01587	0.69	-1.4
1,706,319	-		CCNA_01587	0.70	+1.5
1,706,335	-		CCNA_01587	0.71	-1.0
1,706,335	-		CCNA_01587	0.71	-0.9
1,706,335	-		CCNA_01587	0.71	+0.8
1,706,364	-		CCNA_01587	0.73	-1.1
1,706,373	+		CCNA_01587	0.74	-1.2
1,706,391	-		CCNA_01587	0.75	+0.7
1,706,422	-		CCNA_01587	0.77	+0.3
1,706,430	+		CCNA_01587	0.78	-1.9
1,706,433	-		CCNA_01587	0.78	+0.1
1,706,457	+		CCNA_01587	0.79	-0.3
1,706,467	+		CCNA_01587	0.80	+0.0
1,706,467	+		CCNA_01587	0.80	-0.4
1,706,475	-		CCNA_01587	0.81	-0.6
1,706,487	+		CCNA_01587	0.81	+0.0
1,706,497	+		CCNA_01587	0.82	+0.9
1,706,505	+				+1.0
1,706,523	-		CCNA_01587	0.84	+0.7
1,706,554	-		CCNA_01587	0.86	-0.7
1,706,559	-		CCNA_01587	0.86	-1.7
1,706,609	+		CCNA_01587	0.90	-0.5
1,706,617	-				+0.7
1,706,727	+				-0.8
1,706,732	+				+0.0
1,706,773	+				-0.9
1,706,903	-		CCNA_01588	0.11	-2.2
1,706,958	-		CCNA_01588	0.15	-0.5
1,706,981	-		CCNA_01588	0.17	+0.8
1,706,983	-		CCNA_01588	0.17	-2.7
1,707,010	+		CCNA_01588	0.19	-1.1
1,707,018	-		CCNA_01588	0.20	-0.7
1,707,043	+		CCNA_01588	0.21	-0.8
1,707,043	+		CCNA_01588	0.21	-1.0
1,707,071	-		CCNA_01588	0.24	-1.5
1,707,090	+		CCNA_01588	0.25	-0.0
1,707,093	-		CCNA_01588	0.25	-0.9
1,707,105	+		CCNA_01588	0.26	-1.1
1,707,114	+		CCNA_01588	0.27	-0.8
1,707,159	+		CCNA_01588	0.30	+0.0
1,707,167	-		CCNA_01588	0.31	+1.2
1,707,167	-		CCNA_01588	0.31	-1.9
1,707,200	-		CCNA_01588	0.33	+0.5
1,707,204	+		CCNA_01588	0.33	-0.3
1,707,291	-		CCNA_01588	0.40	-0.3
1,707,291	-		CCNA_01588	0.40	-1.1
1,707,312	-		CCNA_01588	0.41	-0.9
1,707,372	+		CCNA_01588	0.46	+0.7
1,707,428	+		CCNA_01588	0.50	-1.2
1,707,433	+		CCNA_01588	0.50	+0.3
1,707,433	+		CCNA_01588	0.50	-1.8
1,707,441	-		CCNA_01588	0.51	-0.6
1,707,462	+		CCNA_01588	0.52	+0.1
1,707,468	+		CCNA_01588	0.53	+1.4
1,707,468	+		CCNA_01588	0.53	+1.4
1,707,469	+		CCNA_01588	0.53	-0.6
1,707,469	+		CCNA_01588	0.53	+1.9
1,707,505	-		CCNA_01588	0.56	-0.3
1,707,505	-		CCNA_01588	0.56	-0.3
1,707,569	+		CCNA_01588	0.60	+0.8
1,707,571	-		CCNA_01588	0.60	-0.9
1,707,590	+		CCNA_01588	0.62	-0.9
1,707,635	-		CCNA_01588	0.65	-1.3
1,707,660	-		CCNA_01588	0.67	+0.4
1,707,663	+		CCNA_01588	0.67	+0.0
1,707,663	+		CCNA_01588	0.67	-1.1
1,707,671	-		CCNA_01588	0.68	-1.3
1,707,671	-		CCNA_01588	0.68	-0.9
1,707,671	-		CCNA_01588	0.68	+0.5
1,707,724	-				+1.8
1,707,888	+		CCNA_01588	0.84	+1.2
1,707,940	-		CCNA_01588	0.88	-2.1
1,707,940	-		CCNA_01588	0.88	-1.5
1,708,022	+				-0.5
1,708,053	-				+0.9
1,708,115	+				+0.0
1,708,197	+				+0.2
1,708,214	-				+1.1
1,708,285	-		CCNA_01589	0.15	-1.2
1,708,288	+		CCNA_01589	0.15	-1.7
1,708,402	+		CCNA_01589	0.26	+1.5
1,708,410	-		CCNA_01589	0.26	+0.8
1,708,441	-		CCNA_01589	0.29	-1.5
1,708,447	+		CCNA_01589	0.29	-1.6
1,708,463	+		CCNA_01589	0.31	+0.0
1,708,466	+		CCNA_01589	0.31	-0.7
1,708,514	+		CCNA_01589	0.35	-1.0
1,708,522	-		CCNA_01589	0.36	+1.5
1,708,522	-		CCNA_01589	0.36	+0.5
1,708,522	-		CCNA_01589	0.36	-1.0
1,708,522	-		CCNA_01589	0.36	+0.1
1,708,557	-		CCNA_01589	0.39	+0.7
1,708,595	+		CCNA_01589	0.42	-0.4
1,708,595	+		CCNA_01589	0.42	-0.9
1,708,600	+		CCNA_01589	0.43	-0.2
1,708,600	+		CCNA_01589	0.43	-1.8
1,708,600	+		CCNA_01589	0.43	-1.4
1,708,603	-		CCNA_01589	0.43	+0.4
1,708,603	-		CCNA_01589	0.43	-1.4
1,708,608	-		CCNA_01589	0.44	-0.4
1,708,618	+		CCNA_01589	0.45	+2.1
1,708,657	+		CCNA_01589	0.48	-0.3
1,708,665	-		CCNA_01589	0.49	+0.8
1,708,737	+		CCNA_01589	0.55	-0.5
1,708,745	-				+3.8
1,708,745	-		CCNA_01589	0.56	-0.4
1,708,745	-		CCNA_01589	0.56	-0.6
1,708,747	+		CCNA_01589	0.56	-1.7
1,708,790	+		CCNA_01589	0.60	-0.7
1,708,810	+		CCNA_01589	0.61	-0.1
1,708,815	+		CCNA_01589	0.62	-1.1
1,708,815	+		CCNA_01589	0.62	-0.9
1,708,815	+		CCNA_01589	0.62	-1.7
1,708,815	+		CCNA_01589	0.62	-0.8
1,708,823	-		CCNA_01589	0.63	+0.9
1,708,823	-		CCNA_01589	0.63	-0.1
1,708,823	-		CCNA_01589	0.63	+0.5
1,708,823	-		CCNA_01589	0.63	+0.8
1,708,823	-				+1.2
1,708,823	-		CCNA_01589	0.63	+0.2
1,708,828	-		CCNA_01589	0.63	+1.3
1,708,833	-		CCNA_01589	0.63	+0.4
1,708,835	+		CCNA_01589	0.64	-1.6
1,708,865	-		CCNA_01589	0.66	-0.5
1,708,889	+		CCNA_01589	0.68	+0.0
1,708,890	-		CCNA_01589	0.68	-1.0
1,708,935	-		CCNA_01589	0.72	-0.9
1,708,935	-		CCNA_01589	0.72	+1.1
1,708,958	-		CCNA_01589	0.74	+0.1
1,708,991	-		CCNA_01589	0.77	+1.0
1,708,996	-		CCNA_01589	0.78	+0.9
1,709,019	+		CCNA_01589	0.80	+0.2
1,709,019	+		CCNA_01589	0.80	-0.7
1,709,019	+		CCNA_01589	0.80	+0.8
1,709,019	+		CCNA_01589	0.80	+0.1
1,709,019	+		CCNA_01589	0.80	+1.5
1,709,027	-		CCNA_01589	0.80	-2.1
1,709,027	-		CCNA_01589	0.80	-0.8
1,709,027	-		CCNA_01589	0.80	-0.3
1,709,035	+		CCNA_01589	0.81	+1.2
1,709,036	+		CCNA_01589	0.81	+1.4
1,709,038	-		CCNA_01589	0.81	-0.2
1,709,043	-		CCNA_01589	0.82	-0.9
1,709,044	-		CCNA_01589	0.82	+1.5
1,709,050	-		CCNA_01589	0.82	+0.5
1,709,100	+		CCNA_01589	0.87	+1.4