Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01561

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
1,678,817	-		CCNA_01560	0.70	+1.0
1,678,819	+		CCNA_01560	0.70	+0.6
1,678,819	+		CCNA_01560	0.70	-0.4
1,678,819	+		CCNA_01560	0.70	-1.6
1,678,819	+		CCNA_01560	0.70	+0.8
1,678,901	-		CCNA_01560	0.73	+1.2
1,678,921	+		CCNA_01560	0.74	-0.8
1,678,921	+		CCNA_01560	0.74	-1.9
1,678,921	+		CCNA_01560	0.74	-0.5
1,678,974	-		CCNA_01560	0.75	-0.1
1,678,989	+		CCNA_01560	0.76	-0.6
1,678,989	+		CCNA_01560	0.76	-2.0
1,678,989	+		CCNA_01560	0.76	+0.2
1,678,993	-		CCNA_01560	0.76	-0.6
1,678,998	-		CCNA_01560	0.76	-0.9
1,678,998	-		CCNA_01560	0.76	+1.5
1,678,998	-		CCNA_01560	0.76	-1.5
1,679,001	+		CCNA_01560	0.76	-1.1
1,679,009	+		CCNA_01560	0.77	-0.3
1,679,017	-		CCNA_01560	0.77	-0.7
1,679,041	+		CCNA_01560	0.78	-0.5
1,679,127	+		CCNA_01560	0.81	-1.4
1,679,127	+		CCNA_01560	0.81	+0.3
1,679,142	+		CCNA_01560	0.82	-0.4
1,679,153	+		CCNA_01560	0.82	-0.7
1,679,153	+		CCNA_01560	0.82	+1.7
1,679,161	+		CCNA_01560	0.82	-0.1
1,679,161	-		CCNA_01560	0.82	+0.6
1,679,161	-		CCNA_01560	0.82	-0.7
1,679,202	+		CCNA_01560	0.84	-0.4
1,679,205	-		CCNA_01560	0.84	+0.6
1,679,288	+		CCNA_01560	0.87	-1.1
1,679,310	+		CCNA_01560	0.88	+1.0
1,679,314	-		CCNA_01560	0.88	-1.1
1,679,317	+		CCNA_01560	0.88	+1.0
1,679,370	+		CCNA_01560	0.90	+0.1
1,679,370	+		CCNA_01560	0.90	-1.1
1,679,378	-				-0.0
1,679,378	-				-0.6
1,679,378	-				+0.4
1,679,397	+				+0.3
1,679,409	+				+0.8
1,679,426	+				-0.1
1,679,426	+				-0.6
1,679,434	-				-0.8
1,679,460	+				+1.1
1,679,469	-				-0.8
1,679,494	+				-0.6
1,679,495	-				+1.0
1,679,513	-				-1.1
1,679,520	+				-0.6
1,679,858	-		CCNA_01561	0.16	+0.2
1,679,909	-		CCNA_01561	0.29	-0.9
1,679,955	-		CCNA_01561	0.41	-1.1
1,679,955	-		CCNA_01561	0.41	-2.1
1,679,977	-		CCNA_01561	0.47	-0.6
1,679,977	-		CCNA_01561	0.47	-0.0
1,680,025	+		CCNA_01561	0.59	-0.4
1,680,059	-		CCNA_01561	0.68	-1.2
1,680,075	+		CCNA_01561	0.72	-0.2
1,680,075	+		CCNA_01561	0.72	-1.0
1,680,075	+		CCNA_01561	0.72	+0.5
1,680,082	+		CCNA_01561	0.74	-0.2
1,680,178	+				+0.1
1,680,492	+		CCNA_01562	0.47	-1.3
1,680,533	+		CCNA_01562	0.53	+0.4
1,680,557	+		CCNA_01562	0.57	-0.1
1,680,565	-		CCNA_01562	0.58	+0.6
1,680,588	+		CCNA_01562	0.61	+1.4
1,680,588	+		CCNA_01562	0.61	-0.2
1,680,645	+		CCNA_01562	0.70	+1.2
1,680,674	+		CCNA_01562	0.74	+0.9
1,680,697	+		CCNA_01562	0.77	+0.2
1,680,705	-		CCNA_01562	0.79	+0.9
1,680,746	+		CCNA_01562	0.85	-0.6
1,680,748	-		CCNA_01562	0.85	+0.4
1,680,812	+				+0.8
1,680,812	+				+1.5
1,680,812	+				+1.5
1,680,812	+				+0.3
1,680,820	-				+1.1
1,680,911	-				-0.1
1,680,975	+		CCNA_01563	0.11	+0.0
1,680,975	+		CCNA_01563	0.11	+0.6
1,680,981	+		CCNA_01563	0.11	+0.3
1,681,000	+		CCNA_01563	0.13	+0.2
1,681,009	-		CCNA_01563	0.14	-0.8
1,681,021	+		CCNA_01563	0.15	+1.2
1,681,029	+		CCNA_01563	0.16	-1.1
1,681,029	+		CCNA_01563	0.16	+0.2
1,681,066	-		CCNA_01563	0.19	-1.1
1,681,075	+		CCNA_01563	0.20	+0.9
1,681,099	+		CCNA_01563	0.22	-0.6
1,681,125	-		CCNA_01563	0.24	+3.0
1,681,125	-		CCNA_01563	0.24	-0.4