Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00156

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00155 and CCNA_00156 are separated by 132 nucleotidesCCNA_00156 and CCNA_00157 are separated by 70 nucleotidesCCNA_00157 and CCNA_00158 are separated by 227 nucleotides CCNA_00155: CCNA_00155 - DNA polymerase III, beta chain, at 163,413 to 164,531 _00155 CCNA_00156: CCNA_00156 - ArsR-family transcriptional regulator, at 164,664 to 164,951 _00156 CCNA_00157: CCNA_00157 - glyoxalase family protein, at 165,022 to 165,393 _00157 CCNA_00158: CCNA_00158 - DNA replication and repair protein recF, at 165,621 to 166,784 _00158 Position (kb) 164 165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 164.525 kb on + strandat 164.525 kb on + strandat 164.609 kb on + strandat 164.609 kb on + strandat 164.612 kb on + strandat 164.612 kb on - strandat 164.618 kb on + strandat 164.627 kb on - strandat 164.627 kb on - strandat 164.637 kb on + strandat 164.645 kb on - strandat 164.650 kb on - strandat 164.694 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.703 kb on + strand, within CCNA_00156at 164.704 kb on - strand, within CCNA_00156at 164.704 kb on - strand, within CCNA_00156at 164.711 kb on - strand, within CCNA_00156at 164.712 kb on + strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.745 kb on + strand, within CCNA_00156at 164.745 kb on + strand, within CCNA_00156at 164.750 kb on + strand, within CCNA_00156at 164.753 kb on - strand, within CCNA_00156at 164.781 kb on + strand, within CCNA_00156at 164.793 kb on + strand, within CCNA_00156at 164.798 kb on + strand, within CCNA_00156at 164.803 kb on + strand, within CCNA_00156at 164.823 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.911 kb on + strand, within CCNA_00156at 164.913 kb on + strand, within CCNA_00156at 164.919 kb on - strand, within CCNA_00156at 164.943 kb on - strandat 164.943 kb on - strandat 164.944 kb on - strandat 164.946 kb on + strandat 165.018 kb on + strandat 165.018 kb on + strandat 165.018 kb on + strandat 165.026 kb on - strandat 165.026 kb on - strandat 165.026 kb on - strandat 165.033 kb on + strandat 165.071 kb on - strand, within CCNA_00157at 165.077 kb on - strand, within CCNA_00157at 165.077 kb on - strand, within CCNA_00157at 165.162 kb on - strand, within CCNA_00157at 165.253 kb on - strand, within CCNA_00157at 165.263 kb on - strand, within CCNA_00157at 165.278 kb on + strand, within CCNA_00157at 165.278 kb on + strand, within CCNA_00157at 165.286 kb on - strand, within CCNA_00157at 165.286 kb on - strand, within CCNA_00157at 165.295 kb on + strand, within CCNA_00157at 165.297 kb on + strand, within CCNA_00157at 165.305 kb on - strand, within CCNA_00157at 165.307 kb on - strand, within CCNA_00157at 165.325 kb on + strand, within CCNA_00157at 165.330 kb on + strand, within CCNA_00157at 165.338 kb on - strand, within CCNA_00157at 165.377 kb on + strandat 165.377 kb on - strandat 165.385 kb on - strandat 165.421 kb on - strandat 165.428 kb on + strandat 165.447 kb on + strandat 165.466 kb on - strandat 165.506 kb on - strandat 165.522 kb on - strandat 165.522 kb on - strandat 165.522 kb on - strandat 165.536 kb on + strandat 165.554 kb on - strandat 165.564 kb on - strandat 165.582 kb on + strandat 165.582 kb on + strandat 165.582 kb on + strandat 165.595 kb on + strandat 165.614 kb on + strandat 165.681 kb on + strandat 165.683 kb on + strandat 165.711 kb on - strandat 165.711 kb on - strandat 165.711 kb on - strandat 165.711 kb on - strandat 165.727 kb on + strandat 165.744 kb on - strand, within CCNA_00158at 165.764 kb on + strand, within CCNA_00158at 165.764 kb on + strand, within CCNA_00158at 165.764 kb on + strand, within CCNA_00158at 165.767 kb on - strand, within CCNA_00158at 165.772 kb on - strand, within CCNA_00158at 165.772 kb on - strand, within CCNA_00158at 165.772 kb on - strand, within CCNA_00158at 165.777 kb on - strand, within CCNA_00158at 165.780 kb on + strand, within CCNA_00158at 165.780 kb on + strand, within CCNA_00158at 165.787 kb on - strand, within CCNA_00158at 165.790 kb on + strand, within CCNA_00158at 165.791 kb on + strand, within CCNA_00158at 165.796 kb on + strand, within CCNA_00158at 165.824 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.845 kb on - strand, within CCNA_00158at 165.847 kb on + strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.857 kb on - strand, within CCNA_00158at 165.864 kb on + strand, within CCNA_00158at 165.881 kb on - strand, within CCNA_00158at 165.900 kb on - strand, within CCNA_00158at 165.903 kb on + strand, within CCNA_00158at 165.911 kb on - strand, within CCNA_00158at 165.912 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.947 kb on + strand, within CCNA_00158

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml
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164,525 + +0.9
164,525 + +1.3
164,609 + +0.7
164,609 + -2.1
164,612 + +0.4
164,612 - +0.8
164,618 + +1.5
164,627 - -1.4
164,627 - -2.4
164,637 + -1.2
164,645 - -1.1
164,650 - -2.0
164,694 + CCNA_00156 0.10 +0.6
164,696 + CCNA_00156 0.11 +0.3
164,696 + CCNA_00156 0.11 -0.5
164,696 + CCNA_00156 0.11 -0.8
164,703 + CCNA_00156 0.14 +1.1
164,704 - CCNA_00156 0.14 -1.1
164,704 - CCNA_00156 0.14 -0.4
164,711 - CCNA_00156 0.16 -3.8
164,712 + CCNA_00156 0.17 +0.7
164,738 - CCNA_00156 0.26 +0.9
164,745 + CCNA_00156 0.28 +0.3
164,745 + CCNA_00156 0.28 +1.1
164,750 + CCNA_00156 0.30 +0.3
164,753 - CCNA_00156 0.31 -1.8
164,781 + CCNA_00156 0.41 +1.5
164,793 + CCNA_00156 0.45 +0.6
164,798 + CCNA_00156 0.47 -0.1
164,803 + CCNA_00156 0.48 -1.0
164,823 + CCNA_00156 0.55 +1.8
164,868 + CCNA_00156 0.71 +0.4
164,868 + CCNA_00156 0.71 +0.7
164,868 + CCNA_00156 0.71 +0.4
164,876 - CCNA_00156 0.74 +1.1
164,876 - CCNA_00156 0.74 +0.7
164,876 - CCNA_00156 0.74 +1.1
164,911 + CCNA_00156 0.86 -0.3
164,913 + CCNA_00156 0.86 -0.3
164,919 - CCNA_00156 0.89 +0.4
164,943 - +0.5
164,943 - -1.6
164,944 - -0.8
164,946 + +0.7
165,018 + +0.2
165,018 + +0.4
165,018 + +1.2
165,026 - -1.6
165,026 - -1.3
165,026 - -1.2
165,033 + -1.7
165,071 - CCNA_00157 0.13 +1.4
165,077 - CCNA_00157 0.15 +1.1
165,077 - CCNA_00157 0.15 +1.4
165,162 - CCNA_00157 0.38 -0.4
165,253 - CCNA_00157 0.62 +0.1
165,263 - CCNA_00157 0.65 +1.1
165,278 + CCNA_00157 0.69 -1.5
165,278 + CCNA_00157 0.69 -0.7
165,286 - CCNA_00157 0.71 +0.8
165,286 - CCNA_00157 0.71 +0.4
165,295 + CCNA_00157 0.73 -0.1
165,297 + CCNA_00157 0.74 -1.0
165,305 - CCNA_00157 0.76 -0.8
165,307 - CCNA_00157 0.77 -1.9
165,325 + CCNA_00157 0.81 +2.4
165,330 + CCNA_00157 0.83 +1.6
165,338 - CCNA_00157 0.85 -2.0
165,377 + +1.0
165,377 - +0.4
165,385 - -0.1
165,421 - +0.8
165,428 + +0.8
165,447 + +0.2
165,466 - -1.1
165,506 - -0.1
165,522 - -1.3
165,522 - +0.2
165,522 - -0.0
165,536 + +0.4
165,554 - -1.8
165,564 - +0.2
165,582 + +0.1
165,582 + +0.8
165,582 + +0.5
165,595 + +0.9
165,614 + +1.3
165,681 + +1.1
165,683 + -0.6
165,711 - -2.3
165,711 - -1.1
165,711 - -0.3
165,711 - -1.5
165,727 + -2.5
165,744 - CCNA_00158 0.11 +2.1
165,764 + CCNA_00158 0.12 -2.2
165,764 + CCNA_00158 0.12 -1.0
165,764 + CCNA_00158 0.12 -1.4
165,767 - CCNA_00158 0.13 +1.2
165,772 - CCNA_00158 0.13 +1.5
165,772 - CCNA_00158 0.13 +1.3
165,772 - CCNA_00158 0.13 +1.8
165,777 - CCNA_00158 0.13 -1.4
165,780 + CCNA_00158 0.14 -0.2
165,780 + CCNA_00158 0.14 +1.1
165,787 - CCNA_00158 0.14 -3.1
165,790 + CCNA_00158 0.15 +1.1
165,791 + CCNA_00158 0.15 +0.8
165,796 + CCNA_00158 0.15 -0.2
165,824 + CCNA_00158 0.17 +0.3
165,842 + CCNA_00158 0.19 +0.9
165,842 + CCNA_00158 0.19 +0.4
165,842 + CCNA_00158 0.19 -0.8
165,842 + CCNA_00158 0.19 -0.3
165,845 - CCNA_00158 0.19 +0.2
165,847 + CCNA_00158 0.19 +0.9
165,850 - CCNA_00158 0.20 -0.6
165,850 - CCNA_00158 0.20 -0.4
165,850 - CCNA_00158 0.20 -2.7
165,850 - CCNA_00158 0.20 -0.4
165,850 - CCNA_00158 0.20 +1.6
165,850 - CCNA_00158 0.20 -1.7
165,850 - CCNA_00158 0.20 +0.3
165,850 - CCNA_00158 0.20 -1.5
165,857 - CCNA_00158 0.20 +0.6
165,864 + CCNA_00158 0.21 +0.0
165,881 - CCNA_00158 0.22 -0.9
165,900 - CCNA_00158 0.24 +0.6
165,903 + CCNA_00158 0.24 +1.2
165,911 - CCNA_00158 0.25 -1.9
165,912 - CCNA_00158 0.25 +0.1
165,917 - CCNA_00158 0.25 +1.4
165,917 - CCNA_00158 0.25 -0.9
165,917 - CCNA_00158 0.25 -0.7
165,917 - CCNA_00158 0.25 -0.7
165,947 + CCNA_00158 0.28 -1.9

Or see this region's nucleotide sequence