Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00091 and CCNA_00092 overlap by 4 nucleotides CCNA_00092 and CCNA_00093 are separated by 98 nucleotides CCNA_00093 and CCNA_00094 are separated by 72 nucleotides
CCNA_00091: CCNA_00091 - transporter, drug/metabolite exporter family, at 103,149 to 104,042
_00091
CCNA_00092: CCNA_00092 - short chain dehydrogenase, at 104,039 to 104,929
_00092
CCNA_00093: CCNA_00093 - hypothetical protein, at 105,028 to 105,237
_00093
CCNA_00094: CCNA_00094 - WecG/TagA-family glycosyltransferase HfsJ, at 105,310 to 106,230
_00094
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 103.052 kb on + strand at 103.146 kb on + strand at 103.170 kb on - strand at 103.198 kb on + strand at 103.198 kb on + strand at 103.206 kb on - strand at 103.206 kb on - strand at 103.208 kb on + strand at 103.208 kb on - strand at 103.216 kb on - strand at 103.216 kb on - strand at 103.226 kb on + strand at 103.261 kb on + strand, within CCNA_00091 at 103.269 kb on - strand, within CCNA_00091 at 103.296 kb on + strand, within CCNA_00091 at 103.342 kb on - strand, within CCNA_00091 at 103.401 kb on + strand, within CCNA_00091 at 103.430 kb on - strand, within CCNA_00091 at 103.459 kb on + strand, within CCNA_00091 at 103.478 kb on + strand, within CCNA_00091 at 103.483 kb on + strand, within CCNA_00091 at 103.491 kb on - strand, within CCNA_00091 at 103.491 kb on - strand, within CCNA_00091 at 103.491 kb on - strand, within CCNA_00091 at 103.519 kb on + strand, within CCNA_00091 at 103.550 kb on - strand, within CCNA_00091 at 103.568 kb on + strand, within CCNA_00091 at 103.580 kb on + strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.586 kb on - strand, within CCNA_00091 at 103.589 kb on + strand, within CCNA_00091 at 103.607 kb on - strand, within CCNA_00091 at 103.632 kb on + strand, within CCNA_00091 at 103.653 kb on + strand, within CCNA_00091 at 103.656 kb on - strand, within CCNA_00091 at 103.671 kb on - strand, within CCNA_00091 at 103.676 kb on - strand, within CCNA_00091 at 103.697 kb on + strand, within CCNA_00091 at 103.697 kb on + strand, within CCNA_00091 at 103.705 kb on - strand, within CCNA_00091 at 103.705 kb on - strand, within CCNA_00091 at 103.705 kb on - strand, within CCNA_00091 at 103.715 kb on + strand, within CCNA_00091 at 103.728 kb on - strand, within CCNA_00091 at 103.747 kb on + strand, within CCNA_00091 at 103.788 kb on - strand, within CCNA_00091 at 103.789 kb on + strand, within CCNA_00091 at 103.797 kb on - strand, within CCNA_00091 at 103.849 kb on + strand, within CCNA_00091 at 103.916 kb on + strand, within CCNA_00091 at 103.923 kb on + strand, within CCNA_00091 at 103.931 kb on - strand, within CCNA_00091 at 103.957 kb on + strand at 103.975 kb on - strand at 103.979 kb on - strand at 103.991 kb on + strand at 103.999 kb on - strand at 104.024 kb on + strand at 104.024 kb on + strand at 104.024 kb on + strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.032 kb on - strand at 104.044 kb on - strand at 104.140 kb on + strand, within CCNA_00092 at 104.148 kb on - strand, within CCNA_00092 at 104.148 kb on - strand, within CCNA_00092 at 104.155 kb on + strand, within CCNA_00092 at 104.155 kb on + strand, within CCNA_00092 at 104.163 kb on + strand, within CCNA_00092 at 104.194 kb on - strand, within CCNA_00092 at 104.225 kb on + strand, within CCNA_00092 at 104.228 kb on - strand, within CCNA_00092 at 104.374 kb on + strand, within CCNA_00092 at 104.382 kb on - strand, within CCNA_00092 at 104.388 kb on + strand, within CCNA_00092 at 104.409 kb on + strand, within CCNA_00092 at 104.466 kb on + strand, within CCNA_00092 at 104.466 kb on + strand, within CCNA_00092 at 104.474 kb on - strand, within CCNA_00092 at 104.479 kb on + strand, within CCNA_00092 at 104.551 kb on + strand, within CCNA_00092 at 104.594 kb on - strand, within CCNA_00092 at 104.604 kb on + strand, within CCNA_00092 at 104.604 kb on + strand, within CCNA_00092 at 104.612 kb on - strand, within CCNA_00092 at 104.629 kb on + strand, within CCNA_00092 at 104.637 kb on - strand, within CCNA_00092 at 104.669 kb on + strand, within CCNA_00092 at 104.710 kb on + strand at 104.710 kb on + strand, within CCNA_00092 at 104.711 kb on + strand, within CCNA_00092 at 104.718 kb on + strand, within CCNA_00092 at 104.720 kb on - strand, within CCNA_00092 at 104.720 kb on - strand, within CCNA_00092 at 104.726 kb on - strand, within CCNA_00092 at 104.726 kb on - strand, within CCNA_00092 at 104.745 kb on + strand at 104.745 kb on + strand, within CCNA_00092 at 104.763 kb on - strand, within CCNA_00092 at 104.770 kb on + strand, within CCNA_00092 at 104.770 kb on + strand, within CCNA_00092 at 104.778 kb on - strand, within CCNA_00092 at 104.785 kb on + strand, within CCNA_00092 at 104.785 kb on + strand, within CCNA_00092 at 104.793 kb on - strand, within CCNA_00092 at 104.823 kb on - strand, within CCNA_00092 at 104.832 kb on + strand, within CCNA_00092 at 104.854 kb on + strand at 104.862 kb on - strand at 104.893 kb on - strand at 104.920 kb on - strand at 104.944 kb on + strand at 104.946 kb on + strand at 105.001 kb on - strand at 105.020 kb on - strand at 105.048 kb on - strand at 105.090 kb on + strand, within CCNA_00093 at 105.106 kb on + strand, within CCNA_00093 at 105.117 kb on + strand, within CCNA_00093 at 105.125 kb on - strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.131 kb on + strand, within CCNA_00093 at 105.136 kb on + strand, within CCNA_00093 at 105.136 kb on + strand, within CCNA_00093 at 105.139 kb on - strand, within CCNA_00093 at 105.139 kb on - strand, within CCNA_00093 at 105.141 kb on + strand, within CCNA_00093 at 105.141 kb on + strand, within CCNA_00093 at 105.144 kb on - strand, within CCNA_00093 at 105.144 kb on - strand, within CCNA_00093 at 105.149 kb on - strand, within CCNA_00093 at 105.156 kb on + strand, within CCNA_00093 at 105.159 kb on - strand, within CCNA_00093 at 105.164 kb on - strand, within CCNA_00093 at 105.164 kb on - strand, within CCNA_00093 at 105.189 kb on - strand, within CCNA_00093 at 105.205 kb on - strand, within CCNA_00093 at 105.242 kb on + strand at 105.250 kb on - strand at 105.266 kb on + strand at 105.297 kb on - strand at 105.320 kb on + strand at 105.332 kb on + strand at 105.337 kb on + strand at 105.345 kb on - strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.389 kb on + strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.397 kb on - strand at 105.399 kb on - strand at 105.433 kb on - strand, within CCNA_00094 at 105.502 kb on + strand at 105.511 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.524 kb on - strand, within CCNA_00094 at 105.526 kb on + strand, within CCNA_00094 at 105.546 kb on - strand, within CCNA_00094 at 105.604 kb on - strand, within CCNA_00094 at 105.610 kb on - strand, within CCNA_00094 at 105.628 kb on - strand, within CCNA_00094 at 105.642 kb on + strand, within CCNA_00094 at 105.642 kb on + strand, within CCNA_00094 at 105.660 kb on - strand, within CCNA_00094 at 105.665 kb on - strand, within CCNA_00094 at 105.672 kb on - strand, within CCNA_00094 at 105.703 kb on + strand, within CCNA_00094 at 105.703 kb on + strand, within CCNA_00094 at 105.723 kb on - strand, within CCNA_00094 at 105.723 kb on - strand, within CCNA_00094 at 105.746 kb on + strand, within CCNA_00094 at 105.769 kb on + strand, within CCNA_00094 at 105.769 kb on + strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.777 kb on - strand, within CCNA_00094 at 105.804 kb on + strand, within CCNA_00094 at 105.833 kb on + strand, within CCNA_00094 at 105.850 kb on + strand, within CCNA_00094 at 105.855 kb on + strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.858 kb on - strand, within CCNA_00094 at 105.877 kb on + strand, within CCNA_00094 at 105.882 kb on + strand, within CCNA_00094 at 105.884 kb on - strand, within CCNA_00094 at 105.885 kb on - strand, within CCNA_00094 at 105.887 kb on + strand, within CCNA_00094
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 103,052 + -1.2 103,146 + -0.3 103,170 - -2.1 103,198 + -0.5 103,198 + +0.2 103,206 - -0.4 103,206 - -0.5 103,208 + -0.9 103,208 - -0.8 103,216 - -0.5 103,216 - -1.4 103,226 + +1.8 103,261 + CCNA_00091 0.13 -0.8 103,269 - CCNA_00091 0.13 +0.4 103,296 + CCNA_00091 0.16 +1.8 103,342 - CCNA_00091 0.22 +0.5 103,401 + CCNA_00091 0.28 -0.5 103,430 - CCNA_00091 0.31 +0.5 103,459 + CCNA_00091 0.35 -1.7 103,478 + CCNA_00091 0.37 +0.7 103,483 + CCNA_00091 0.37 +0.2 103,491 - CCNA_00091 0.38 +1.0 103,491 - CCNA_00091 0.38 -1.2 103,491 - CCNA_00091 0.38 +0.0 103,519 + CCNA_00091 0.41 +0.0 103,550 - CCNA_00091 0.45 -0.6 103,568 + CCNA_00091 0.47 -2.1 103,580 + CCNA_00091 0.48 -2.5 103,586 - CCNA_00091 0.49 -1.5 103,586 - CCNA_00091 0.49 -0.7 103,586 - CCNA_00091 0.49 +0.7 103,586 - CCNA_00091 0.49 -0.7 103,586 - CCNA_00091 0.49 +0.9 103,589 + CCNA_00091 0.49 -0.5 103,607 - CCNA_00091 0.51 -0.6 103,632 + CCNA_00091 0.54 -0.5 103,653 + CCNA_00091 0.56 -0.4 103,656 - CCNA_00091 0.57 -1.6 103,671 - CCNA_00091 0.58 +0.3 103,676 - CCNA_00091 0.59 -0.4 103,697 + CCNA_00091 0.61 -0.8 103,697 + CCNA_00091 0.61 +0.4 103,705 - CCNA_00091 0.62 +0.0 103,705 - CCNA_00091 0.62 +0.1 103,705 - CCNA_00091 0.62 -0.3 103,715 + CCNA_00091 0.63 -2.1 103,728 - CCNA_00091 0.65 +0.2 103,747 + CCNA_00091 0.67 -0.7 103,788 - CCNA_00091 0.71 -0.3 103,789 + CCNA_00091 0.72 +0.2 103,797 - CCNA_00091 0.72 -0.9 103,849 + CCNA_00091 0.78 +1.1 103,916 + CCNA_00091 0.86 -0.2 103,923 + CCNA_00091 0.87 -0.6 103,931 - CCNA_00091 0.87 -1.4 103,957 + +0.6 103,975 - -0.9 103,979 - -0.3 103,991 + +0.2 103,999 - -1.0 104,024 + -2.1 104,024 + -1.4 104,024 + +0.8 104,032 - -0.8 104,032 - +0.1 104,032 - +0.4 104,032 - +0.3 104,032 - +0.2 104,044 - +0.0 104,140 + CCNA_00092 0.11 -0.9 104,148 - CCNA_00092 0.12 -0.5 104,148 - CCNA_00092 0.12 -0.2 104,155 + CCNA_00092 0.13 -1.8 104,155 + CCNA_00092 0.13 +0.8 104,163 + CCNA_00092 0.14 -2.2 104,194 - CCNA_00092 0.17 -1.2 104,225 + CCNA_00092 0.21 -0.1 104,228 - CCNA_00092 0.21 -0.2 104,374 + CCNA_00092 0.38 -0.4 104,382 - CCNA_00092 0.38 -0.1 104,388 + CCNA_00092 0.39 -2.1 104,409 + CCNA_00092 0.42 +0.2 104,466 + CCNA_00092 0.48 -0.6 104,466 + CCNA_00092 0.48 -2.2 104,474 - CCNA_00092 0.49 -1.5 104,479 + CCNA_00092 0.49 -0.4 104,551 + CCNA_00092 0.57 -0.5 104,594 - CCNA_00092 0.62 -1.8 104,604 + CCNA_00092 0.63 +0.1 104,604 + CCNA_00092 0.63 -3.2 104,612 - CCNA_00092 0.64 +3.1 104,629 + CCNA_00092 0.66 -0.5 104,637 - CCNA_00092 0.67 -2.1 104,669 + CCNA_00092 0.71 -1.2 104,710 + +1.4 104,710 + CCNA_00092 0.75 -0.7 104,711 + CCNA_00092 0.75 -1.1 104,718 + CCNA_00092 0.76 -0.4 104,720 - CCNA_00092 0.76 -0.5 104,720 - CCNA_00092 0.76 +0.2 104,726 - CCNA_00092 0.77 -2.9 104,726 - CCNA_00092 0.77 -0.6 104,745 + +3.4 104,745 + CCNA_00092 0.79 +0.4 104,763 - CCNA_00092 0.81 +2.1 104,770 + CCNA_00092 0.82 -0.2 104,770 + CCNA_00092 0.82 -1.4 104,778 - CCNA_00092 0.83 -0.3 104,785 + CCNA_00092 0.84 -1.7 104,785 + CCNA_00092 0.84 +0.2 104,793 - CCNA_00092 0.85 -0.7 104,823 - CCNA_00092 0.88 -1.2 104,832 + CCNA_00092 0.89 -2.2 104,854 + -2.5 104,862 - -0.0 104,893 - -0.2 104,920 - -0.0 104,944 + -0.7 104,946 + -0.4 105,001 - +1.1 105,020 - +0.9 105,048 - +0.5 105,090 + CCNA_00093 0.30 +0.4 105,106 + CCNA_00093 0.37 +1.3 105,117 + CCNA_00093 0.42 -0.1 105,125 - CCNA_00093 0.46 +0.1 105,131 + CCNA_00093 0.49 -1.1 105,131 + CCNA_00093 0.49 -1.8 105,131 + CCNA_00093 0.49 -2.0 105,131 + CCNA_00093 0.49 +0.2 105,136 + CCNA_00093 0.51 -2.1 105,136 + CCNA_00093 0.51 -0.8 105,139 - CCNA_00093 0.53 +0.4 105,139 - CCNA_00093 0.53 +0.8 105,141 + CCNA_00093 0.54 +0.2 105,141 + CCNA_00093 0.54 -0.3 105,144 - CCNA_00093 0.55 +0.1 105,144 - CCNA_00093 0.55 -1.6 105,149 - CCNA_00093 0.58 -1.0 105,156 + CCNA_00093 0.61 -0.8 105,159 - CCNA_00093 0.62 +0.2 105,164 - CCNA_00093 0.65 -0.6 105,164 - CCNA_00093 0.65 -0.7 105,189 - CCNA_00093 0.77 -0.5 105,205 - CCNA_00093 0.84 +0.9 105,242 + +0.2 105,250 - -0.5 105,266 + -2.0 105,297 - +0.6 105,320 + +0.5 105,332 + +0.8 105,337 + -1.3 105,345 - +0.6 105,389 + -2.2 105,389 + +0.4 105,389 + +0.1 105,389 + +0.8 105,389 + +0.2 105,397 - +0.1 105,397 - +0.0 105,397 - +0.6 105,397 - +0.7 105,397 - -1.0 105,397 - +1.0 105,397 - +0.7 105,399 - +0.4 105,433 - CCNA_00094 0.13 +0.4 105,502 + +1.1 105,511 - CCNA_00094 0.22 +1.5 105,524 - CCNA_00094 0.23 -0.4 105,524 - CCNA_00094 0.23 -0.1 105,524 - CCNA_00094 0.23 +0.4 105,526 + CCNA_00094 0.23 -2.4 105,546 - CCNA_00094 0.26 +2.2 105,604 - CCNA_00094 0.32 +1.1 105,610 - CCNA_00094 0.33 +1.5 105,628 - CCNA_00094 0.35 +0.2 105,642 + CCNA_00094 0.36 -0.3 105,642 + CCNA_00094 0.36 +0.4 105,660 - CCNA_00094 0.38 +1.4 105,665 - CCNA_00094 0.39 -0.2 105,672 - CCNA_00094 0.39 -0.0 105,703 + CCNA_00094 0.43 +0.9 105,703 + CCNA_00094 0.43 -0.6 105,723 - CCNA_00094 0.45 -0.4 105,723 - CCNA_00094 0.45 +1.2 105,746 + CCNA_00094 0.47 -1.1 105,769 + CCNA_00094 0.50 -0.8 105,769 + CCNA_00094 0.50 +0.3 105,777 - CCNA_00094 0.51 -1.2 105,777 - CCNA_00094 0.51 +0.7 105,777 - CCNA_00094 0.51 +0.3 105,777 - CCNA_00094 0.51 +0.2 105,804 + CCNA_00094 0.54 -2.0 105,833 + CCNA_00094 0.57 -0.4 105,850 + CCNA_00094 0.59 -0.8 105,855 + CCNA_00094 0.59 +0.5 105,858 - CCNA_00094 0.60 -0.6 105,858 - CCNA_00094 0.60 +3.2 105,858 - CCNA_00094 0.60 +0.3 105,877 + CCNA_00094 0.62 -0.6 105,882 + CCNA_00094 0.62 +0.8 105,884 - CCNA_00094 0.62 -0.6 105,885 - CCNA_00094 0.62 +0.4 105,887 + CCNA_00094 0.63 -1.6
Or see this region's nucleotide sequence