Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00008 and CCNA_00009 are separated by 61 nucleotides CCNA_00009 and CCNA_00010 are separated by 374 nucleotides
CCNA_00008: CCNA_00008 - chromosome replication initiator protein DnaA, at 5,636 to 7,108
_00008
CCNA_00009: CCNA_00009 - alkylated DNA repair protein AlkB, at 7,170 to 7,790
_00009
CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060
_00010
Position (kb) 7
8 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 7.124 kb on + strand at 7.137 kb on - strand at 7.139 kb on + strand at 7.185 kb on - strand at 7.193 kb on + strand at 7.198 kb on + strand at 7.227 kb on + strand at 7.279 kb on + strand, within CCNA_00009 at 7.287 kb on - strand, within CCNA_00009 at 7.299 kb on - strand, within CCNA_00009 at 7.354 kb on + strand, within CCNA_00009 at 7.359 kb on + strand, within CCNA_00009 at 7.367 kb on - strand, within CCNA_00009 at 7.377 kb on - strand, within CCNA_00009 at 7.384 kb on + strand, within CCNA_00009 at 7.440 kb on - strand, within CCNA_00009 at 7.459 kb on + strand, within CCNA_00009 at 7.467 kb on - strand, within CCNA_00009 at 7.467 kb on - strand, within CCNA_00009 at 7.497 kb on + strand, within CCNA_00009 at 7.497 kb on + strand, within CCNA_00009 at 7.505 kb on - strand at 7.505 kb on - strand, within CCNA_00009 at 7.507 kb on + strand, within CCNA_00009 at 7.507 kb on + strand, within CCNA_00009 at 7.507 kb on + strand, within CCNA_00009 at 7.526 kb on - strand, within CCNA_00009 at 7.548 kb on - strand, within CCNA_00009 at 7.548 kb on - strand, within CCNA_00009 at 7.566 kb on + strand, within CCNA_00009 at 7.603 kb on - strand, within CCNA_00009 at 7.622 kb on + strand, within CCNA_00009 at 7.643 kb on + strand, within CCNA_00009 at 7.657 kb on + strand, within CCNA_00009 at 7.657 kb on + strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.692 kb on + strand, within CCNA_00009 at 7.692 kb on + strand, within CCNA_00009 at 7.700 kb on - strand, within CCNA_00009 at 7.700 kb on - strand, within CCNA_00009 at 7.700 kb on - strand, within CCNA_00009 at 7.742 kb on - strand at 7.758 kb on + strand at 7.759 kb on - strand at 7.759 kb on - strand at 7.763 kb on + strand at 7.770 kb on + strand at 7.796 kb on - strand at 7.807 kb on + strand at 7.930 kb on + strand at 7.930 kb on + strand at 7.931 kb on + strand at 7.938 kb on - strand at 7.938 kb on - strand at 7.938 kb on - strand at 7.938 kb on - strand at 7.939 kb on - strand at 7.939 kb on - strand at 7.958 kb on - strand at 7.989 kb on - strand at 7.999 kb on + strand at 8.002 kb on - strand at 8.039 kb on + strand at 8.039 kb on + strand at 8.047 kb on - strand at 8.055 kb on - strand at 8.110 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.148 kb on - strand at 8.148 kb on - strand at 8.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 7,124 + +1.1 7,137 - -0.5 7,139 + -0.1 7,185 - +0.1 7,193 + +3.7 7,198 + +0.4 7,227 + +0.3 7,279 + CCNA_00009 0.18 -1.4 7,287 - CCNA_00009 0.19 -1.1 7,299 - CCNA_00009 0.21 +0.2 7,354 + CCNA_00009 0.30 +0.0 7,359 + CCNA_00009 0.30 +0.2 7,367 - CCNA_00009 0.32 -1.6 7,377 - CCNA_00009 0.33 +0.6 7,384 + CCNA_00009 0.34 -0.1 7,440 - CCNA_00009 0.43 +0.3 7,459 + CCNA_00009 0.47 -0.5 7,467 - CCNA_00009 0.48 -0.8 7,467 - CCNA_00009 0.48 +0.7 7,497 + CCNA_00009 0.53 -1.0 7,497 + CCNA_00009 0.53 -0.6 7,505 - +2.4 7,505 - CCNA_00009 0.54 +0.1 7,507 + CCNA_00009 0.54 +0.3 7,507 + CCNA_00009 0.54 +0.4 7,507 + CCNA_00009 0.54 +0.2 7,526 - CCNA_00009 0.57 +0.7 7,548 - CCNA_00009 0.61 -1.2 7,548 - CCNA_00009 0.61 +0.2 7,566 + CCNA_00009 0.64 -1.7 7,603 - CCNA_00009 0.70 -1.6 7,622 + CCNA_00009 0.73 -0.4 7,643 + CCNA_00009 0.76 -1.8 7,657 + CCNA_00009 0.78 +0.8 7,657 + CCNA_00009 0.78 -1.0 7,665 - CCNA_00009 0.80 -0.8 7,665 - CCNA_00009 0.80 +0.1 7,665 - CCNA_00009 0.80 -1.7 7,665 - CCNA_00009 0.80 -0.4 7,692 + CCNA_00009 0.84 +1.1 7,692 + CCNA_00009 0.84 -2.1 7,700 - CCNA_00009 0.85 -0.1 7,700 - CCNA_00009 0.85 -0.8 7,700 - CCNA_00009 0.85 -0.7 7,742 - +1.2 7,758 + +1.1 7,759 - -2.2 7,759 - +0.5 7,763 + -1.0 7,770 + -0.4 7,796 - -0.6 7,807 + -0.9 7,930 + +1.7 7,930 + +3.1 7,931 + +0.9 7,938 - +1.7 7,938 - +1.7 7,938 - +0.8 7,938 - +1.6 7,939 - +0.6 7,939 - +2.3 7,958 - +8.1 7,989 - +8.1 7,999 + +8.7 8,002 - +2.0 8,039 + +5.6 8,039 + +6.4 8,047 - +6.9 8,055 - +3.2 8,110 + +1.2 8,140 + +5.7 8,140 + +1.4 8,140 + +2.5 8,140 + +0.9 8,148 - +6.2 8,148 - +6.2 8,165 - +3.7
Or see this region's nucleotide sequence