Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11680

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11675 and ABZR86_RS11680 are separated by 227 nucleotidesABZR86_RS11680 and ABZR86_RS11685 are separated by 383 nucleotides ABZR86_RS11675: ABZR86_RS11675 - drug/metabolite exporter YedA, at 2,612,742 to 2,613,662 _RS11675 ABZR86_RS11680: ABZR86_RS11680 - TIGR00366 family protein, at 2,613,890 to 2,615,305 _RS11680 ABZR86_RS11685: ABZR86_RS11685 - fimbrial protein, at 2,615,689 to 2,616,741 _RS11685 Position (kb) 2613 2614 2615 2616Strain fitness (log2 ratio) -2 -1 0 1at 2613.132 kb on + strand, within ABZR86_RS11675at 2613.132 kb on + strand, within ABZR86_RS11675at 2613.132 kb on + strand, within ABZR86_RS11675at 2613.132 kb on + strand, within ABZR86_RS11675at 2613.133 kb on - strand, within ABZR86_RS11675at 2613.133 kb on - strand, within ABZR86_RS11675at 2613.133 kb on - strand, within ABZR86_RS11675at 2613.471 kb on + strand, within ABZR86_RS11675at 2613.471 kb on + strand, within ABZR86_RS11675at 2613.471 kb on + strand, within ABZR86_RS11675at 2613.471 kb on + strand, within ABZR86_RS11675at 2613.472 kb on - strand, within ABZR86_RS11675at 2613.472 kb on - strand, within ABZR86_RS11675at 2613.472 kb on - strand, within ABZR86_RS11675at 2613.477 kb on + strand, within ABZR86_RS11675at 2613.477 kb on + strand, within ABZR86_RS11675at 2613.477 kb on + strand, within ABZR86_RS11675at 2613.477 kb on + strand, within ABZR86_RS11675at 2613.477 kb on + strand, within ABZR86_RS11675at 2613.478 kb on - strand, within ABZR86_RS11675at 2613.478 kb on - strand, within ABZR86_RS11675at 2613.478 kb on - strand, within ABZR86_RS11675at 2613.478 kb on - strand, within ABZR86_RS11675at 2613.516 kb on + strand, within ABZR86_RS11675at 2613.516 kb on + strand, within ABZR86_RS11675at 2613.516 kb on + strand, within ABZR86_RS11675at 2613.516 kb on + strand, within ABZR86_RS11675at 2613.517 kb on - strand, within ABZR86_RS11675at 2613.517 kb on - strand, within ABZR86_RS11675at 2613.517 kb on - strand, within ABZR86_RS11675at 2613.517 kb on - strand, within ABZR86_RS11675at 2613.522 kb on + strand, within ABZR86_RS11675at 2613.522 kb on + strand, within ABZR86_RS11675at 2613.523 kb on - strand, within ABZR86_RS11675at 2613.675 kb on + strandat 2613.676 kb on - strandat 2613.676 kb on - strandat 2613.676 kb on - strandat 2613.865 kb on + strandat 2613.865 kb on + strandat 2613.865 kb on + strandat 2613.865 kb on + strandat 2613.865 kb on + strandat 2613.865 kb on + strandat 2613.865 kb on + strandat 2613.865 kb on + strandat 2613.866 kb on - strandat 2613.866 kb on - strandat 2613.866 kb on - strandat 2613.866 kb on - strandat 2613.866 kb on - strandat 2613.866 kb on - strandat 2613.866 kb on - strandat 2613.866 kb on - strandat 2614.205 kb on + strand, within ABZR86_RS11680at 2614.205 kb on + strand, within ABZR86_RS11680at 2614.205 kb on + strand, within ABZR86_RS11680at 2614.206 kb on - strand, within ABZR86_RS11680at 2614.340 kb on + strand, within ABZR86_RS11680at 2614.341 kb on - strand, within ABZR86_RS11680at 2614.341 kb on - strand, within ABZR86_RS11680at 2614.643 kb on + strand, within ABZR86_RS11680at 2614.722 kb on + strand, within ABZR86_RS11680at 2614.748 kb on + strand, within ABZR86_RS11680at 2614.749 kb on - strand, within ABZR86_RS11680at 2614.749 kb on - strand, within ABZR86_RS11680at 2614.749 kb on - strand, within ABZR86_RS11680at 2614.991 kb on + strand, within ABZR86_RS11680at 2614.991 kb on + strand, within ABZR86_RS11680at 2615.054 kb on + strand, within ABZR86_RS11680at 2615.054 kb on + strand, within ABZR86_RS11680at 2615.055 kb on - strand, within ABZR86_RS11680at 2615.055 kb on - strand, within ABZR86_RS11680at 2615.055 kb on - strand, within ABZR86_RS11680at 2615.055 kb on - strand, within ABZR86_RS11680at 2615.111 kb on + strand, within ABZR86_RS11680at 2615.111 kb on + strand, within ABZR86_RS11680at 2615.111 kb on + strand, within ABZR86_RS11680at 2615.111 kb on + strand, within ABZR86_RS11680at 2615.112 kb on - strand, within ABZR86_RS11680at 2615.112 kb on - strand, within ABZR86_RS11680at 2615.282 kb on + strandat 2615.283 kb on - strandat 2615.320 kb on + strandat 2615.320 kb on + strandat 2615.321 kb on - strandat 2615.321 kb on - strandat 2615.491 kb on + strandat 2615.491 kb on + strandat 2615.492 kb on - strandat 2615.492 kb on - strandat 2615.501 kb on - strandat 2615.501 kb on - strandat 2615.637 kb on + strandat 2615.637 kb on + strandat 2615.637 kb on + strandat 2615.638 kb on - strandat 2615.672 kb on + strandat 2615.672 kb on + strandat 2615.672 kb on + strandat 2615.673 kb on - strandat 2615.680 kb on + strandat 2615.912 kb on + strand, within ABZR86_RS11685at 2615.913 kb on - strand, within ABZR86_RS11685at 2615.995 kb on + strand, within ABZR86_RS11685at 2615.995 kb on + strand, within ABZR86_RS11685at 2615.995 kb on + strand, within ABZR86_RS11685at 2615.995 kb on + strand, within ABZR86_RS11685at 2615.995 kb on + strand, within ABZR86_RS11685at 2615.995 kb on + strand, within ABZR86_RS11685at 2615.996 kb on - strand, within ABZR86_RS11685at 2615.996 kb on - strand, within ABZR86_RS11685at 2616.001 kb on + strand, within ABZR86_RS11685at 2616.001 kb on + strand, within ABZR86_RS11685at 2616.001 kb on + strand, within ABZR86_RS11685at 2616.002 kb on - strand, within ABZR86_RS11685at 2616.002 kb on - strand, within ABZR86_RS11685at 2616.002 kb on - strand, within ABZR86_RS11685at 2616.002 kb on - strand, within ABZR86_RS11685at 2616.089 kb on + strand, within ABZR86_RS11685at 2616.089 kb on + strand, within ABZR86_RS11685at 2616.089 kb on + strand, within ABZR86_RS11685at 2616.090 kb on - strand, within ABZR86_RS11685at 2616.090 kb on - strand, within ABZR86_RS11685at 2616.128 kb on - strand, within ABZR86_RS11685

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,613,132 + ABZR86_RS11675 0.42 -0.3
2,613,132 + ABZR86_RS11675 0.42 +0.1
2,613,132 + ABZR86_RS11675 0.42 +0.5
2,613,132 + ABZR86_RS11675 0.42 +0.0
2,613,133 - ABZR86_RS11675 0.42 +0.8
2,613,133 - ABZR86_RS11675 0.42 -0.3
2,613,133 - ABZR86_RS11675 0.42 -0.7
2,613,471 + ABZR86_RS11675 0.79 -0.1
2,613,471 + ABZR86_RS11675 0.79 +1.5
2,613,471 + ABZR86_RS11675 0.79 -0.4
2,613,471 + ABZR86_RS11675 0.79 -0.4
2,613,472 - ABZR86_RS11675 0.79 -1.1
2,613,472 - ABZR86_RS11675 0.79 +0.6
2,613,472 - ABZR86_RS11675 0.79 -0.4
2,613,477 + ABZR86_RS11675 0.80 +0.9
2,613,477 + ABZR86_RS11675 0.80 +0.2
2,613,477 + ABZR86_RS11675 0.80 +0.6
2,613,477 + ABZR86_RS11675 0.80 -0.5
2,613,477 + ABZR86_RS11675 0.80 -0.1
2,613,478 - ABZR86_RS11675 0.80 -0.5
2,613,478 - ABZR86_RS11675 0.80 +0.1
2,613,478 - ABZR86_RS11675 0.80 -0.6
2,613,478 - ABZR86_RS11675 0.80 +0.2
2,613,516 + ABZR86_RS11675 0.84 +0.4
2,613,516 + ABZR86_RS11675 0.84 +0.4
2,613,516 + ABZR86_RS11675 0.84 -0.4
2,613,516 + ABZR86_RS11675 0.84 +0.2
2,613,517 - ABZR86_RS11675 0.84 +0.2
2,613,517 - ABZR86_RS11675 0.84 -0.6
2,613,517 - ABZR86_RS11675 0.84 +0.2
2,613,517 - ABZR86_RS11675 0.84 +0.2
2,613,522 + ABZR86_RS11675 0.85 +1.2
2,613,522 + ABZR86_RS11675 0.85 -1.2
2,613,523 - ABZR86_RS11675 0.85 -0.4
2,613,675 + -0.1
2,613,676 - -0.3
2,613,676 - -0.3
2,613,676 - +0.3
2,613,865 + -1.0
2,613,865 + -0.8
2,613,865 + -0.8
2,613,865 + +0.1
2,613,865 + -1.2
2,613,865 + -0.8
2,613,865 + -0.1
2,613,865 + -0.7
2,613,866 - -0.0
2,613,866 - -0.3
2,613,866 - +0.8
2,613,866 - +0.2
2,613,866 - -0.4
2,613,866 - -0.1
2,613,866 - -2.0
2,613,866 - +0.8
2,614,205 + ABZR86_RS11680 0.22 -0.2
2,614,205 + ABZR86_RS11680 0.22 -0.0
2,614,205 + ABZR86_RS11680 0.22 +0.2
2,614,206 - ABZR86_RS11680 0.22 -2.7
2,614,340 + ABZR86_RS11680 0.32 -0.4
2,614,341 - ABZR86_RS11680 0.32 -0.7
2,614,341 - ABZR86_RS11680 0.32 -0.1
2,614,643 + ABZR86_RS11680 0.53 -0.7
2,614,722 + ABZR86_RS11680 0.59 -0.2
2,614,748 + ABZR86_RS11680 0.61 -0.0
2,614,749 - ABZR86_RS11680 0.61 +0.1
2,614,749 - ABZR86_RS11680 0.61 +0.1
2,614,749 - ABZR86_RS11680 0.61 +1.0
2,614,991 + ABZR86_RS11680 0.78 -0.2
2,614,991 + ABZR86_RS11680 0.78 +0.1
2,615,054 + ABZR86_RS11680 0.82 +0.1
2,615,054 + ABZR86_RS11680 0.82 -0.7
2,615,055 - ABZR86_RS11680 0.82 -0.5
2,615,055 - ABZR86_RS11680 0.82 -1.7
2,615,055 - ABZR86_RS11680 0.82 -1.5
2,615,055 - ABZR86_RS11680 0.82 +0.1
2,615,111 + ABZR86_RS11680 0.86 -0.3
2,615,111 + ABZR86_RS11680 0.86 +0.3
2,615,111 + ABZR86_RS11680 0.86 -0.5
2,615,111 + ABZR86_RS11680 0.86 -0.1
2,615,112 - ABZR86_RS11680 0.86 +0.3
2,615,112 - ABZR86_RS11680 0.86 +0.0
2,615,282 + +0.0
2,615,283 - -0.1
2,615,320 + -0.2
2,615,320 + -1.0
2,615,321 - -0.1
2,615,321 - +0.1
2,615,491 + -0.5
2,615,491 + +0.6
2,615,492 - +0.4
2,615,492 - +0.5
2,615,501 - +0.6
2,615,501 - -0.8
2,615,637 + +0.5
2,615,637 + +0.2
2,615,637 + -1.0
2,615,638 - -0.2
2,615,672 + -0.2
2,615,672 + +0.2
2,615,672 + +0.2
2,615,673 - -0.4
2,615,680 + +0.7
2,615,912 + ABZR86_RS11685 0.21 +0.5
2,615,913 - ABZR86_RS11685 0.21 -0.1
2,615,995 + ABZR86_RS11685 0.29 +0.5
2,615,995 + ABZR86_RS11685 0.29 +0.3
2,615,995 + ABZR86_RS11685 0.29 +0.2
2,615,995 + ABZR86_RS11685 0.29 +0.2
2,615,995 + ABZR86_RS11685 0.29 -0.4
2,615,995 + ABZR86_RS11685 0.29 -0.4
2,615,996 - ABZR86_RS11685 0.29 -0.1
2,615,996 - ABZR86_RS11685 0.29 -0.2
2,616,001 + ABZR86_RS11685 0.30 +0.5
2,616,001 + ABZR86_RS11685 0.30 -0.4
2,616,001 + ABZR86_RS11685 0.30 -0.2
2,616,002 - ABZR86_RS11685 0.30 +0.1
2,616,002 - ABZR86_RS11685 0.30 -0.1
2,616,002 - ABZR86_RS11685 0.30 +0.0
2,616,002 - ABZR86_RS11685 0.30 -0.1
2,616,089 + ABZR86_RS11685 0.38 -0.7
2,616,089 + ABZR86_RS11685 0.38 +0.4
2,616,089 + ABZR86_RS11685 0.38 +0.0
2,616,090 - ABZR86_RS11685 0.38 +0.6
2,616,090 - ABZR86_RS11685 0.38 +0.2
2,616,128 - ABZR86_RS11685 0.42 -0.5

Or see this region's nucleotide sequence