Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07875 and ABZR86_RS07880 are separated by 127 nucleotides ABZR86_RS07880 and ABZR86_RS07885 are separated by 103 nucleotides ABZR86_RS07885 and ABZR86_RS07890 are separated by 49 nucleotides ABZR86_RS07890 and ABZR86_RS07895 are separated by 124 nucleotides
ABZR86_RS07875: ABZR86_RS07875 - hypothetical protein, at 1,751,085 to 1,752,386
_RS07875
ABZR86_RS07880: ABZR86_RS07880 - 30S ribosomal protein THX, at 1,752,514 to 1,752,678
_RS07880
ABZR86_RS07885: ABZR86_RS07885 - cation diffusion facilitator family transporter, at 1,752,782 to 1,753,765
_RS07885
ABZR86_RS07890: ABZR86_RS07890 - MerC domain-containing protein, at 1,753,815 to 1,754,237
_RS07890
ABZR86_RS07895: ABZR86_RS07895 - TonB-dependent receptor, at 1,754,362 to 1,756,362
_RS07895
Position (kb)
1752
1753
1754 Strain fitness (log2 ratio)
-2
-1
0
1 at 1751.788 kb on - strand, within ABZR86_RS07875 at 1752.075 kb on + strand, within ABZR86_RS07875 at 1752.208 kb on - strand, within ABZR86_RS07875 at 1752.208 kb on - strand, within ABZR86_RS07875 at 1752.208 kb on - strand, within ABZR86_RS07875 at 1752.427 kb on - strand at 1752.626 kb on + strand, within ABZR86_RS07880 at 1752.626 kb on + strand, within ABZR86_RS07880 at 1752.626 kb on + strand, within ABZR86_RS07880 at 1752.627 kb on - strand, within ABZR86_RS07880 at 1752.638 kb on + strand, within ABZR86_RS07880 at 1752.638 kb on + strand, within ABZR86_RS07880 at 1752.690 kb on + strand at 1752.691 kb on - strand at 1752.697 kb on + strand at 1752.710 kb on + strand at 1752.711 kb on - strand at 1752.732 kb on + strand at 1753.232 kb on + strand, within ABZR86_RS07885 at 1753.233 kb on - strand, within ABZR86_RS07885 at 1753.233 kb on - strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.776 kb on + strand at 1753.777 kb on - strand at 1753.777 kb on - strand at 1753.777 kb on - strand at 1753.940 kb on - strand, within ABZR86_RS07890 at 1754.250 kb on - strand at 1754.340 kb on + strand at 1754.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,751,788 - ABZR86_RS07875 0.54 +1.0 1,752,075 + ABZR86_RS07875 0.76 +0.4 1,752,208 - ABZR86_RS07875 0.86 +0.7 1,752,208 - ABZR86_RS07875 0.86 -0.2 1,752,208 - ABZR86_RS07875 0.86 +0.8 1,752,427 - +0.3 1,752,626 + ABZR86_RS07880 0.68 -0.0 1,752,626 + ABZR86_RS07880 0.68 -0.5 1,752,626 + ABZR86_RS07880 0.68 -0.4 1,752,627 - ABZR86_RS07880 0.68 -0.3 1,752,638 + ABZR86_RS07880 0.75 -0.1 1,752,638 + ABZR86_RS07880 0.75 -0.7 1,752,690 + +0.0 1,752,691 - -0.4 1,752,697 + -0.5 1,752,710 + -0.3 1,752,711 - -0.1 1,752,732 + +0.0 1,753,232 + ABZR86_RS07885 0.46 -0.5 1,753,233 - ABZR86_RS07885 0.46 +0.5 1,753,233 - ABZR86_RS07885 0.46 -0.7 1,753,467 + ABZR86_RS07885 0.70 +1.6 1,753,467 + ABZR86_RS07885 0.70 -0.0 1,753,467 + ABZR86_RS07885 0.70 -1.0 1,753,467 + ABZR86_RS07885 0.70 -0.2 1,753,468 - ABZR86_RS07885 0.70 +0.5 1,753,468 - ABZR86_RS07885 0.70 -1.2 1,753,468 - ABZR86_RS07885 0.70 -0.7 1,753,468 - ABZR86_RS07885 0.70 -0.2 1,753,468 - ABZR86_RS07885 0.70 -0.4 1,753,468 - ABZR86_RS07885 0.70 -0.7 1,753,468 - ABZR86_RS07885 0.70 -1.8 1,753,776 + -0.1 1,753,777 - -0.7 1,753,777 - -0.4 1,753,777 - -0.7 1,753,940 - ABZR86_RS07890 0.30 +0.5 1,754,250 - -0.7 1,754,340 + +0.4 1,754,341 - -0.1
Or see this region's nucleotide sequence