Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07520

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07510 and ABZR86_RS07515 are separated by 9 nucleotidesABZR86_RS07515 and ABZR86_RS07520 are separated by 222 nucleotidesABZR86_RS07520 and ABZR86_RS07525 are separated by 46 nucleotidesABZR86_RS07525 and ABZR86_RS07530 are separated by 8 nucleotides ABZR86_RS07510: ABZR86_RS07510 - diguanylate cyclase, at 1,654,895 to 1,656,574 _RS07510 ABZR86_RS07515: ABZR86_RS07515 - Ivy family c-type lysozyme inhibitor, at 1,656,584 to 1,657,138 _RS07515 ABZR86_RS07520: ABZR86_RS07520 - thiamine pyrophosphate-dependent enzyme, at 1,657,361 to 1,659,628 _RS07520 ABZR86_RS07525: ABZR86_RS07525 - hypothetical protein, at 1,659,675 to 1,660,151 _RS07525 ABZR86_RS07530: ABZR86_RS07530 - GNAT family N-acetyltransferase, at 1,660,160 to 1,660,720 _RS07530 Position (kb) 1657 1658 1659 1660Strain fitness (log2 ratio) -2 -1 0 1 2at 1656.470 kb on + strandat 1656.470 kb on + strandat 1656.470 kb on + strandat 1656.501 kb on + strandat 1656.597 kb on + strandat 1656.597 kb on + strandat 1656.597 kb on + strandat 1656.597 kb on + strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.847 kb on + strand, within ABZR86_RS07515at 1656.847 kb on + strand, within ABZR86_RS07515at 1656.848 kb on - strand, within ABZR86_RS07515at 1656.943 kb on - strand, within ABZR86_RS07515at 1656.943 kb on - strand, within ABZR86_RS07515at 1657.183 kb on - strandat 1657.257 kb on + strandat 1657.258 kb on - strandat 1657.343 kb on + strandat 1657.343 kb on + strandat 1657.343 kb on + strandat 1657.344 kb on - strandat 1657.344 kb on - strandat 1657.344 kb on - strandat 1657.363 kb on - strandat 1657.363 kb on - strandat 1657.440 kb on + strandat 1657.440 kb on + strandat 1657.440 kb on + strandat 1657.440 kb on + strandat 1657.445 kb on - strandat 1657.445 kb on - strandat 1657.737 kb on + strand, within ABZR86_RS07520at 1657.738 kb on - strand, within ABZR86_RS07520at 1657.739 kb on + strand, within ABZR86_RS07520at 1657.740 kb on - strand, within ABZR86_RS07520at 1657.833 kb on + strand, within ABZR86_RS07520at 1657.833 kb on + strand, within ABZR86_RS07520at 1657.833 kb on + strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.862 kb on + strand, within ABZR86_RS07520at 1657.957 kb on + strand, within ABZR86_RS07520at 1658.125 kb on - strand, within ABZR86_RS07520at 1658.134 kb on - strand, within ABZR86_RS07520at 1658.172 kb on + strand, within ABZR86_RS07520at 1658.173 kb on - strand, within ABZR86_RS07520at 1658.267 kb on - strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.268 kb on + strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.269 kb on - strand, within ABZR86_RS07520at 1658.320 kb on - strand, within ABZR86_RS07520at 1658.434 kb on - strand, within ABZR86_RS07520at 1658.575 kb on - strand, within ABZR86_RS07520at 1658.575 kb on - strand, within ABZR86_RS07520at 1658.575 kb on - strand, within ABZR86_RS07520at 1658.601 kb on + strand, within ABZR86_RS07520at 1658.601 kb on + strand, within ABZR86_RS07520at 1658.602 kb on - strand, within ABZR86_RS07520at 1658.602 kb on - strand, within ABZR86_RS07520at 1658.799 kb on + strand, within ABZR86_RS07520at 1658.921 kb on + strand, within ABZR86_RS07520at 1658.952 kb on + strand, within ABZR86_RS07520at 1658.953 kb on - strand, within ABZR86_RS07520at 1658.953 kb on - strand, within ABZR86_RS07520at 1659.294 kb on + strand, within ABZR86_RS07520at 1659.295 kb on - strand, within ABZR86_RS07520at 1659.375 kb on + strand, within ABZR86_RS07520at 1659.375 kb on + strand, within ABZR86_RS07520at 1659.375 kb on + strand, within ABZR86_RS07520at 1659.376 kb on - strand, within ABZR86_RS07520at 1659.376 kb on - strand, within ABZR86_RS07520at 1659.376 kb on - strand, within ABZR86_RS07520at 1659.376 kb on - strand, within ABZR86_RS07520at 1659.542 kb on + strandat 1659.542 kb on + strandat 1659.542 kb on + strandat 1659.542 kb on + strandat 1659.543 kb on - strandat 1659.673 kb on + strandat 1659.674 kb on - strandat 1659.807 kb on + strand, within ABZR86_RS07525at 1659.807 kb on + strand, within ABZR86_RS07525at 1659.807 kb on + strand, within ABZR86_RS07525at 1659.816 kb on + strand, within ABZR86_RS07525at 1659.816 kb on + strand, within ABZR86_RS07525at 1659.816 kb on + strand, within ABZR86_RS07525at 1659.817 kb on - strand, within ABZR86_RS07525at 1659.817 kb on - strand, within ABZR86_RS07525at 1659.817 kb on - strand, within ABZR86_RS07525at 1659.817 kb on - strand, within ABZR86_RS07525at 1659.817 kb on - strand, within ABZR86_RS07525at 1659.817 kb on - strand, within ABZR86_RS07525at 1659.817 kb on - strand, within ABZR86_RS07525at 1659.949 kb on + strand, within ABZR86_RS07525at 1659.949 kb on + strand, within ABZR86_RS07525at 1659.949 kb on + strand, within ABZR86_RS07525at 1659.950 kb on - strand, within ABZR86_RS07525at 1659.950 kb on - strand, within ABZR86_RS07525at 1659.950 kb on - strand, within ABZR86_RS07525at 1660.386 kb on + strand, within ABZR86_RS07530at 1660.387 kb on - strand, within ABZR86_RS07530at 1660.593 kb on + strand, within ABZR86_RS07530at 1660.593 kb on + strand, within ABZR86_RS07530at 1660.594 kb on - strand, within ABZR86_RS07530at 1660.594 kb on - strand, within ABZR86_RS07530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,656,470 + -0.6
1,656,470 + -0.0
1,656,470 + +0.0
1,656,501 + -0.2
1,656,597 + +0.0
1,656,597 + +0.5
1,656,597 + -0.6
1,656,597 + -0.9
1,656,598 - +0.2
1,656,598 - -0.2
1,656,598 - +1.6
1,656,598 - -0.2
1,656,598 - +1.5
1,656,598 - -0.2
1,656,598 - +0.1
1,656,847 + ABZR86_RS07515 0.47 +0.7
1,656,847 + ABZR86_RS07515 0.47 -0.4
1,656,848 - ABZR86_RS07515 0.48 +0.1
1,656,943 - ABZR86_RS07515 0.65 -0.3
1,656,943 - ABZR86_RS07515 0.65 -0.5
1,657,183 - -0.0
1,657,257 + -0.1
1,657,258 - +0.3
1,657,343 + -0.5
1,657,343 + -0.5
1,657,343 + +0.4
1,657,344 - +0.6
1,657,344 - -0.7
1,657,344 - +0.2
1,657,363 - -1.3
1,657,363 - +1.9
1,657,440 + +0.2
1,657,440 + -0.2
1,657,440 + -0.1
1,657,440 + -0.3
1,657,445 - +1.1
1,657,445 - -0.5
1,657,737 + ABZR86_RS07520 0.17 -0.2
1,657,738 - ABZR86_RS07520 0.17 +0.1
1,657,739 + ABZR86_RS07520 0.17 +0.6
1,657,740 - ABZR86_RS07520 0.17 +0.8
1,657,833 + ABZR86_RS07520 0.21 -0.1
1,657,833 + ABZR86_RS07520 0.21 -0.4
1,657,833 + ABZR86_RS07520 0.21 +1.2
1,657,834 - ABZR86_RS07520 0.21 +0.2
1,657,834 - ABZR86_RS07520 0.21 +0.4
1,657,834 - ABZR86_RS07520 0.21 -0.6
1,657,834 - ABZR86_RS07520 0.21 -0.8
1,657,834 - ABZR86_RS07520 0.21 +0.1
1,657,834 - ABZR86_RS07520 0.21 -0.6
1,657,862 + ABZR86_RS07520 0.22 -0.0
1,657,957 + ABZR86_RS07520 0.26 +0.1
1,658,125 - ABZR86_RS07520 0.34 -0.5
1,658,134 - ABZR86_RS07520 0.34 -0.7
1,658,172 + ABZR86_RS07520 0.36 -0.4
1,658,173 - ABZR86_RS07520 0.36 -0.6
1,658,267 - ABZR86_RS07520 0.40 -0.7
1,658,268 + ABZR86_RS07520 0.40 +0.5
1,658,268 + ABZR86_RS07520 0.40 -0.8
1,658,268 + ABZR86_RS07520 0.40 -1.5
1,658,268 + ABZR86_RS07520 0.40 -1.1
1,658,268 + ABZR86_RS07520 0.40 +0.3
1,658,268 + ABZR86_RS07520 0.40 +1.0
1,658,268 + ABZR86_RS07520 0.40 -0.4
1,658,268 + ABZR86_RS07520 0.40 -0.7
1,658,268 + ABZR86_RS07520 0.40 -0.3
1,658,269 - ABZR86_RS07520 0.40 +0.2
1,658,269 - ABZR86_RS07520 0.40 +0.5
1,658,269 - ABZR86_RS07520 0.40 +0.8
1,658,269 - ABZR86_RS07520 0.40 +0.9
1,658,269 - ABZR86_RS07520 0.40 -0.6
1,658,269 - ABZR86_RS07520 0.40 -0.3
1,658,269 - ABZR86_RS07520 0.40 -0.4
1,658,269 - ABZR86_RS07520 0.40 +0.2
1,658,320 - ABZR86_RS07520 0.42 +0.6
1,658,434 - ABZR86_RS07520 0.47 -0.5
1,658,575 - ABZR86_RS07520 0.54 +0.3
1,658,575 - ABZR86_RS07520 0.54 +0.1
1,658,575 - ABZR86_RS07520 0.54 +0.1
1,658,601 + ABZR86_RS07520 0.55 -0.4
1,658,601 + ABZR86_RS07520 0.55 +0.6
1,658,602 - ABZR86_RS07520 0.55 -1.0
1,658,602 - ABZR86_RS07520 0.55 +0.1
1,658,799 + ABZR86_RS07520 0.63 -0.1
1,658,921 + ABZR86_RS07520 0.69 +0.9
1,658,952 + ABZR86_RS07520 0.70 -0.7
1,658,953 - ABZR86_RS07520 0.70 -1.7
1,658,953 - ABZR86_RS07520 0.70 -2.2
1,659,294 + ABZR86_RS07520 0.85 -2.4
1,659,295 - ABZR86_RS07520 0.85 +0.6
1,659,375 + ABZR86_RS07520 0.89 -0.2
1,659,375 + ABZR86_RS07520 0.89 -0.6
1,659,375 + ABZR86_RS07520 0.89 -0.1
1,659,376 - ABZR86_RS07520 0.89 -0.4
1,659,376 - ABZR86_RS07520 0.89 +0.8
1,659,376 - ABZR86_RS07520 0.89 +0.1
1,659,376 - ABZR86_RS07520 0.89 +0.0
1,659,542 + +0.6
1,659,542 + -0.1
1,659,542 + +0.5
1,659,542 + -0.8
1,659,543 - +0.7
1,659,673 + -0.0
1,659,674 - -0.2
1,659,807 + ABZR86_RS07525 0.28 +1.1
1,659,807 + ABZR86_RS07525 0.28 -0.5
1,659,807 + ABZR86_RS07525 0.28 +0.5
1,659,816 + ABZR86_RS07525 0.30 +0.1
1,659,816 + ABZR86_RS07525 0.30 -0.7
1,659,816 + ABZR86_RS07525 0.30 +0.1
1,659,817 - ABZR86_RS07525 0.30 +0.3
1,659,817 - ABZR86_RS07525 0.30 +0.8
1,659,817 - ABZR86_RS07525 0.30 +0.3
1,659,817 - ABZR86_RS07525 0.30 +0.3
1,659,817 - ABZR86_RS07525 0.30 +0.6
1,659,817 - ABZR86_RS07525 0.30 -0.9
1,659,817 - ABZR86_RS07525 0.30 -0.3
1,659,949 + ABZR86_RS07525 0.57 +0.1
1,659,949 + ABZR86_RS07525 0.57 -0.4
1,659,949 + ABZR86_RS07525 0.57 -0.2
1,659,950 - ABZR86_RS07525 0.58 +0.5
1,659,950 - ABZR86_RS07525 0.58 +2.2
1,659,950 - ABZR86_RS07525 0.58 +0.4
1,660,386 + ABZR86_RS07530 0.40 +0.4
1,660,387 - ABZR86_RS07530 0.40 +0.8
1,660,593 + ABZR86_RS07530 0.77 +0.8
1,660,593 + ABZR86_RS07530 0.77 +0.9
1,660,594 - ABZR86_RS07530 0.77 +0.1
1,660,594 - ABZR86_RS07530 0.77 +0.4

Or see this region's nucleotide sequence