Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01020

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01000 and ABZR86_RS01005 are separated by 120 nucleotidesABZR86_RS01005 and ABZR86_RS01010 overlap by 41 nucleotidesABZR86_RS01010 and ABZR86_RS01015 are separated by 90 nucleotidesABZR86_RS01015 and ABZR86_RS01020 are separated by 131 nucleotidesABZR86_RS01020 and ABZR86_RS01025 are separated by 145 nucleotidesABZR86_RS01025 and ABZR86_RS01030 are separated by 61 nucleotides ABZR86_RS01000: ABZR86_RS01000 - cytochrome P450, at 200,540 to 201,574 _RS01000 ABZR86_RS01005: ABZR86_RS01005 - tryptorubin family RiPP precursor, at 201,695 to 201,817 _RS01005 ABZR86_RS01010: ABZR86_RS01010 - hypothetical protein, at 201,777 to 201,983 _RS01010 ABZR86_RS01015: ABZR86_RS01015 - hypothetical protein, at 202,074 to 202,232 _RS01015 ABZR86_RS01020: ABZR86_RS01020 - hypothetical protein, at 202,364 to 202,933 _RS01020 ABZR86_RS01025: ABZR86_RS01025 - hypothetical protein, at 203,079 to 203,609 _RS01025 ABZR86_RS01030: ABZR86_RS01030 - hypothetical protein, at 203,671 to 203,997 _RS01030 Position (kb) 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 201.427 kb on + strand, within ABZR86_RS01000at 201.428 kb on - strand, within ABZR86_RS01000at 201.670 kb on + strandat 201.670 kb on + strandat 201.671 kb on - strandat 201.671 kb on - strandat 201.708 kb on + strand, within ABZR86_RS01005at 201.708 kb on + strand, within ABZR86_RS01005at 201.709 kb on - strand, within ABZR86_RS01005at 201.709 kb on - strand, within ABZR86_RS01005at 201.709 kb on - strand, within ABZR86_RS01005at 201.717 kb on + strand, within ABZR86_RS01005at 201.884 kb on + strand, within ABZR86_RS01010at 201.884 kb on + strand, within ABZR86_RS01010at 201.885 kb on - strand, within ABZR86_RS01010at 201.885 kb on - strand, within ABZR86_RS01010at 201.885 kb on - strand, within ABZR86_RS01010at 201.885 kb on - strand, within ABZR86_RS01010at 201.885 kb on - strand, within ABZR86_RS01010at 202.028 kb on - strandat 202.152 kb on + strand, within ABZR86_RS01015at 202.152 kb on + strand, within ABZR86_RS01015at 202.194 kb on + strand, within ABZR86_RS01015at 202.209 kb on + strand, within ABZR86_RS01015at 202.248 kb on + strandat 202.248 kb on + strandat 202.248 kb on + strandat 202.248 kb on + strandat 202.248 kb on + strandat 202.248 kb on + strandat 202.249 kb on - strandat 202.249 kb on - strandat 202.266 kb on - strandat 202.274 kb on - strandat 202.286 kb on + strandat 202.286 kb on + strandat 202.286 kb on + strandat 202.286 kb on + strandat 202.287 kb on - strandat 202.306 kb on + strandat 202.306 kb on + strandat 202.306 kb on + strandat 202.307 kb on - strandat 202.495 kb on + strand, within ABZR86_RS01020at 202.495 kb on + strand, within ABZR86_RS01020at 202.495 kb on + strand, within ABZR86_RS01020at 202.495 kb on + strand, within ABZR86_RS01020at 202.496 kb on - strand, within ABZR86_RS01020at 202.496 kb on - strand, within ABZR86_RS01020at 202.578 kb on + strand, within ABZR86_RS01020at 202.578 kb on + strand, within ABZR86_RS01020at 202.578 kb on + strand, within ABZR86_RS01020at 202.579 kb on - strand, within ABZR86_RS01020at 202.581 kb on + strand, within ABZR86_RS01020at 202.581 kb on + strand, within ABZR86_RS01020at 202.581 kb on + strand, within ABZR86_RS01020at 202.582 kb on - strand, within ABZR86_RS01020at 202.728 kb on - strand, within ABZR86_RS01020at 203.043 kb on + strandat 203.043 kb on + strandat 203.044 kb on - strandat 203.095 kb on + strandat 203.096 kb on - strandat 203.127 kb on + strandat 203.127 kb on + strandat 203.128 kb on - strandat 203.128 kb on - strandat 203.128 kb on - strandat 203.136 kb on + strand, within ABZR86_RS01025at 203.136 kb on + strand, within ABZR86_RS01025at 203.137 kb on - strand, within ABZR86_RS01025at 203.184 kb on + strand, within ABZR86_RS01025at 203.185 kb on - strand, within ABZR86_RS01025at 203.220 kb on + strand, within ABZR86_RS01025at 203.220 kb on + strand, within ABZR86_RS01025at 203.220 kb on + strand, within ABZR86_RS01025at 203.221 kb on - strand, within ABZR86_RS01025at 203.221 kb on - strand, within ABZR86_RS01025at 203.221 kb on - strand, within ABZR86_RS01025at 203.458 kb on - strand, within ABZR86_RS01025at 203.513 kb on - strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.517 kb on + strand, within ABZR86_RS01025at 203.518 kb on - strand, within ABZR86_RS01025at 203.518 kb on - strand, within ABZR86_RS01025at 203.518 kb on - strand, within ABZR86_RS01025at 203.518 kb on - strand, within ABZR86_RS01025at 203.607 kb on + strandat 203.607 kb on + strandat 203.608 kb on - strandat 203.608 kb on - strandat 203.608 kb on - strandat 203.812 kb on + strand, within ABZR86_RS01030at 203.812 kb on + strand, within ABZR86_RS01030at 203.813 kb on - strand, within ABZR86_RS01030at 203.846 kb on + strand, within ABZR86_RS01030at 203.846 kb on + strand, within ABZR86_RS01030at 203.846 kb on + strand, within ABZR86_RS01030at 203.847 kb on - strand, within ABZR86_RS01030at 203.847 kb on - strand, within ABZR86_RS01030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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201,427 + ABZR86_RS01000 0.86 +0.2
201,428 - ABZR86_RS01000 0.86 +0.0
201,670 + +0.2
201,670 + -0.7
201,671 - +0.5
201,671 - -0.6
201,708 + ABZR86_RS01005 0.11 +1.9
201,708 + ABZR86_RS01005 0.11 -0.2
201,709 - ABZR86_RS01005 0.11 +0.3
201,709 - ABZR86_RS01005 0.11 -0.3
201,709 - ABZR86_RS01005 0.11 +0.8
201,717 + ABZR86_RS01005 0.18 -0.5
201,884 + ABZR86_RS01010 0.52 +1.5
201,884 + ABZR86_RS01010 0.52 -0.0
201,885 - ABZR86_RS01010 0.52 +1.0
201,885 - ABZR86_RS01010 0.52 -0.5
201,885 - ABZR86_RS01010 0.52 +0.4
201,885 - ABZR86_RS01010 0.52 -0.2
201,885 - ABZR86_RS01010 0.52 -0.0
202,028 - -0.8
202,152 + ABZR86_RS01015 0.49 -0.8
202,152 + ABZR86_RS01015 0.49 +0.2
202,194 + ABZR86_RS01015 0.75 -0.1
202,209 + ABZR86_RS01015 0.85 +1.9
202,248 + +0.2
202,248 + +0.6
202,248 + +0.5
202,248 + +0.4
202,248 + +0.5
202,248 + -0.1
202,249 - -0.2
202,249 - +0.4
202,266 - +0.1
202,274 - -0.1
202,286 + +1.2
202,286 + +0.1
202,286 + +0.1
202,286 + +0.9
202,287 - +1.0
202,306 + +0.3
202,306 + -0.9
202,306 + -0.4
202,307 - +0.1
202,495 + ABZR86_RS01020 0.23 -1.6
202,495 + ABZR86_RS01020 0.23 -1.0
202,495 + ABZR86_RS01020 0.23 +0.1
202,495 + ABZR86_RS01020 0.23 -0.4
202,496 - ABZR86_RS01020 0.23 -1.2
202,496 - ABZR86_RS01020 0.23 +0.4
202,578 + ABZR86_RS01020 0.38 +0.5
202,578 + ABZR86_RS01020 0.38 +0.1
202,578 + ABZR86_RS01020 0.38 +0.2
202,579 - ABZR86_RS01020 0.38 -0.2
202,581 + ABZR86_RS01020 0.38 -0.2
202,581 + ABZR86_RS01020 0.38 -0.3
202,581 + ABZR86_RS01020 0.38 +0.7
202,582 - ABZR86_RS01020 0.38 +0.3
202,728 - ABZR86_RS01020 0.64 +1.1
203,043 + -0.6
203,043 + +0.2
203,044 - +0.2
203,095 + +0.7
203,096 - -0.1
203,127 + +0.2
203,127 + +0.1
203,128 - +0.0
203,128 - +0.2
203,128 - +0.5
203,136 + ABZR86_RS01025 0.11 -0.5
203,136 + ABZR86_RS01025 0.11 +0.8
203,137 - ABZR86_RS01025 0.11 -0.4
203,184 + ABZR86_RS01025 0.20 -0.1
203,185 - ABZR86_RS01025 0.20 -0.7
203,220 + ABZR86_RS01025 0.27 +0.2
203,220 + ABZR86_RS01025 0.27 +0.4
203,220 + ABZR86_RS01025 0.27 +0.2
203,221 - ABZR86_RS01025 0.27 +0.4
203,221 - ABZR86_RS01025 0.27 -0.3
203,221 - ABZR86_RS01025 0.27 -0.7
203,458 - ABZR86_RS01025 0.71 -1.8
203,513 - ABZR86_RS01025 0.82 -0.0
203,517 + ABZR86_RS01025 0.82 -1.0
203,517 + ABZR86_RS01025 0.82 +0.1
203,517 + ABZR86_RS01025 0.82 +0.7
203,517 + ABZR86_RS01025 0.82 -0.4
203,517 + ABZR86_RS01025 0.82 +0.2
203,517 + ABZR86_RS01025 0.82 +0.1
203,517 + ABZR86_RS01025 0.82 -0.8
203,517 + ABZR86_RS01025 0.82 +0.3
203,517 + ABZR86_RS01025 0.82 -0.4
203,518 - ABZR86_RS01025 0.83 +0.2
203,518 - ABZR86_RS01025 0.83 -0.3
203,518 - ABZR86_RS01025 0.83 +0.4
203,518 - ABZR86_RS01025 0.83 -0.3
203,607 + +0.0
203,607 + -0.2
203,608 - -0.1
203,608 - -0.3
203,608 - -0.1
203,812 + ABZR86_RS01030 0.43 +0.1
203,812 + ABZR86_RS01030 0.43 -0.0
203,813 - ABZR86_RS01030 0.43 -0.3
203,846 + ABZR86_RS01030 0.54 -0.9
203,846 + ABZR86_RS01030 0.54 +0.1
203,846 + ABZR86_RS01030 0.54 -0.1
203,847 - ABZR86_RS01030 0.54 -0.1
203,847 - ABZR86_RS01030 0.54 +0.2

Or see this region's nucleotide sequence