Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4061 and Shewana3_4062 are separated by 49 nucleotides Shewana3_4062 and Shewana3_4063 are separated by 106 nucleotides Shewana3_4063 and Shewana3_4064 are separated by 144 nucleotides
Shewana3_4061: Shewana3_4061 - hypothetical protein (RefSeq), at 4,880,912 to 4,881,862
_4061
Shewana3_4062: Shewana3_4062 - hypothetical protein (RefSeq), at 4,881,912 to 4,882,064
_4062
Shewana3_4063: Shewana3_4063 - LuxR family transcriptional regulator (RefSeq), at 4,882,171 to 4,882,716
_4063
Shewana3_4064: Shewana3_4064 - hypothetical protein (RefSeq), at 4,882,861 to 4,884,063
_4064
Position (kb)
4882
4883 Strain fitness (log2 ratio)
-2
-1
0
1 at 4881.234 kb on + strand, within Shewana3_4061 at 4881.370 kb on + strand, within Shewana3_4061 at 4881.466 kb on - strand, within Shewana3_4061 at 4881.536 kb on - strand, within Shewana3_4061 at 4881.553 kb on + strand, within Shewana3_4061 at 4881.556 kb on - strand, within Shewana3_4061 at 4881.607 kb on + strand, within Shewana3_4061 at 4881.852 kb on + strand at 4881.909 kb on + strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.987 kb on + strand, within Shewana3_4062 at 4882.172 kb on - strand at 4882.533 kb on - strand, within Shewana3_4063 at 4882.605 kb on - strand, within Shewana3_4063 at 4882.681 kb on - strand at 4882.681 kb on - strand at 4882.812 kb on - strand at 4882.968 kb on - strand at 4883.068 kb on + strand, within Shewana3_4064 at 4883.068 kb on - strand, within Shewana3_4064 at 4883.078 kb on - strand, within Shewana3_4064 at 4883.140 kb on + strand, within Shewana3_4064 at 4883.369 kb on - strand, within Shewana3_4064 at 4883.369 kb on - strand, within Shewana3_4064 at 4883.401 kb on + strand, within Shewana3_4064 at 4883.401 kb on + strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.442 kb on - strand, within Shewana3_4064 at 4883.449 kb on - strand, within Shewana3_4064 at 4883.575 kb on + strand, within Shewana3_4064 at 4883.704 kb on + strand, within Shewana3_4064 at 4883.704 kb on + strand, within Shewana3_4064
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,881,234 + Shewana3_4061 0.34 -0.2 4,881,370 + Shewana3_4061 0.48 -0.8 4,881,466 - Shewana3_4061 0.58 -0.2 4,881,536 - Shewana3_4061 0.66 +0.6 4,881,553 + Shewana3_4061 0.67 -0.3 4,881,556 - Shewana3_4061 0.68 +0.0 4,881,607 + Shewana3_4061 0.73 +0.0 4,881,852 + +0.1 4,881,909 + -0.3 4,881,917 - -0.3 4,881,917 - +0.8 4,881,917 - +0.2 4,881,917 - -1.9 4,881,987 + Shewana3_4062 0.49 +0.1 4,882,172 - +0.0 4,882,533 - Shewana3_4063 0.66 -0.8 4,882,605 - Shewana3_4063 0.79 -0.3 4,882,681 - +0.0 4,882,681 - -0.2 4,882,812 - -0.3 4,882,968 - -0.4 4,883,068 + Shewana3_4064 0.17 -0.5 4,883,068 - Shewana3_4064 0.17 -0.1 4,883,078 - Shewana3_4064 0.18 +0.4 4,883,140 + Shewana3_4064 0.23 -0.6 4,883,369 - Shewana3_4064 0.42 -1.0 4,883,369 - Shewana3_4064 0.42 -0.3 4,883,401 + Shewana3_4064 0.45 -1.7 4,883,401 + Shewana3_4064 0.45 +1.0 4,883,409 - Shewana3_4064 0.46 +0.3 4,883,409 - Shewana3_4064 0.46 -0.2 4,883,409 - Shewana3_4064 0.46 -0.3 4,883,409 - Shewana3_4064 0.46 -0.2 4,883,409 - Shewana3_4064 0.46 -0.1 4,883,442 - Shewana3_4064 0.48 -0.3 4,883,449 - Shewana3_4064 0.49 -0.0 4,883,575 + Shewana3_4064 0.59 +0.3 4,883,704 + Shewana3_4064 0.70 -0.5 4,883,704 + Shewana3_4064 0.70 -0.6
Or see this region's nucleotide sequence