Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3972 and Shewana3_3973 are separated by 213 nucleotides Shewana3_3973 and Shewana3_3974 are separated by 1 nucleotides Shewana3_3974 and Shewana3_3975 overlap by 44 nucleotides
Shewana3_3972: Shewana3_3972 - signal recognition particle-docking protein FtsY (RefSeq), at 4,771,020 to 4,772,708
_3972
Shewana3_3973: Shewana3_3973 - putative methyltransferase (RefSeq), at 4,772,922 to 4,773,569
_3973
Shewana3_3974: Shewana3_3974 - hypothetical protein (RefSeq), at 4,773,571 to 4,773,843
_3974
Shewana3_3975: Shewana3_3975 - transcriptional regulator (RefSeq), at 4,773,800 to 4,774,813
_3975
Position (kb)
4772
4773
4774 Strain fitness (log2 ratio)
-2
-1
0
1 at 4773.033 kb on + strand, within Shewana3_3973 at 4773.286 kb on - strand, within Shewana3_3973 at 4773.292 kb on + strand, within Shewana3_3973 at 4773.528 kb on - strand at 4773.537 kb on + strand at 4773.537 kb on + strand at 4773.537 kb on + strand at 4773.545 kb on + strand at 4773.626 kb on - strand, within Shewana3_3974 at 4773.789 kb on - strand, within Shewana3_3974 at 4773.837 kb on + strand at 4773.837 kb on + strand at 4773.845 kb on - strand at 4773.882 kb on - strand at 4773.901 kb on - strand at 4773.914 kb on + strand, within Shewana3_3975 at 4774.069 kb on + strand, within Shewana3_3975 at 4774.077 kb on + strand, within Shewana3_3975 at 4774.085 kb on - strand, within Shewana3_3975 at 4774.133 kb on - strand, within Shewana3_3975 at 4774.179 kb on + strand, within Shewana3_3975 at 4774.204 kb on + strand, within Shewana3_3975 at 4774.296 kb on - strand, within Shewana3_3975 at 4774.373 kb on - strand, within Shewana3_3975 at 4774.486 kb on + strand, within Shewana3_3975 at 4774.487 kb on - strand, within Shewana3_3975 at 4774.494 kb on - strand, within Shewana3_3975 at 4774.525 kb on - strand, within Shewana3_3975
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,773,033 + Shewana3_3973 0.17 -0.6 4,773,286 - Shewana3_3973 0.56 -2.4 4,773,292 + Shewana3_3973 0.57 -0.5 4,773,528 - -2.1 4,773,537 + -0.4 4,773,537 + +0.7 4,773,537 + -0.1 4,773,545 + +0.3 4,773,626 - Shewana3_3974 0.20 -0.3 4,773,789 - Shewana3_3974 0.80 +0.2 4,773,837 + -0.1 4,773,837 + +1.2 4,773,845 - -0.5 4,773,882 - -1.0 4,773,901 - -0.8 4,773,914 + Shewana3_3975 0.11 -0.2 4,774,069 + Shewana3_3975 0.27 -0.1 4,774,077 + Shewana3_3975 0.27 -0.6 4,774,085 - Shewana3_3975 0.28 +0.1 4,774,133 - Shewana3_3975 0.33 -0.0 4,774,179 + Shewana3_3975 0.37 -0.9 4,774,204 + Shewana3_3975 0.40 -0.3 4,774,296 - Shewana3_3975 0.49 -0.5 4,774,373 - Shewana3_3975 0.57 +0.0 4,774,486 + Shewana3_3975 0.68 +0.3 4,774,487 - Shewana3_3975 0.68 +0.7 4,774,494 - Shewana3_3975 0.68 -0.0 4,774,525 - Shewana3_3975 0.71 -0.4
Or see this region's nucleotide sequence