Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3923 and Shewana3_3924 are separated by 627 nucleotides Shewana3_3924 and Shewana3_3925 are separated by 99 nucleotides
Shewana3_3923: Shewana3_3923 - TonB-dependent receptor (RefSeq), at 4,713,715 to 4,715,772
_3923
Shewana3_3924: Shewana3_3924 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,716,400 to 4,717,983
_3924
Shewana3_3925: Shewana3_3925 - bile acid:sodium symporter (RefSeq), at 4,718,083 to 4,719,012
_3925
Position (kb)
4716
4717
4718 Strain fitness (log2 ratio)
-2
-1
0
1 at 4715.444 kb on - strand, within Shewana3_3923 at 4715.536 kb on - strand, within Shewana3_3923 at 4715.681 kb on - strand at 4715.689 kb on + strand at 4715.697 kb on - strand at 4715.961 kb on - strand at 4715.998 kb on + strand at 4716.066 kb on + strand at 4716.130 kb on + strand at 4716.130 kb on + strand at 4716.310 kb on + strand at 4716.604 kb on + strand, within Shewana3_3924 at 4716.612 kb on - strand, within Shewana3_3924 at 4716.612 kb on - strand, within Shewana3_3924 at 4716.760 kb on + strand, within Shewana3_3924 at 4716.791 kb on + strand, within Shewana3_3924 at 4716.868 kb on + strand, within Shewana3_3924 at 4716.997 kb on - strand, within Shewana3_3924 at 4717.214 kb on - strand, within Shewana3_3924 at 4717.273 kb on + strand, within Shewana3_3924 at 4717.299 kb on - strand, within Shewana3_3924 at 4717.328 kb on + strand, within Shewana3_3924 at 4717.429 kb on + strand, within Shewana3_3924 at 4717.486 kb on - strand, within Shewana3_3924 at 4717.558 kb on + strand, within Shewana3_3924 at 4717.614 kb on + strand, within Shewana3_3924 at 4717.666 kb on + strand, within Shewana3_3924 at 4717.822 kb on + strand, within Shewana3_3924 at 4717.857 kb on + strand at 4717.865 kb on - strand at 4717.898 kb on + strand at 4718.033 kb on - strand at 4718.162 kb on - strand at 4718.240 kb on - strand, within Shewana3_3925 at 4718.403 kb on + strand, within Shewana3_3925 at 4718.411 kb on - strand, within Shewana3_3925 at 4718.421 kb on + strand, within Shewana3_3925 at 4718.702 kb on - strand, within Shewana3_3925 at 4718.773 kb on + strand, within Shewana3_3925 at 4718.865 kb on + strand, within Shewana3_3925 at 4718.865 kb on + strand, within Shewana3_3925 at 4718.865 kb on + strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.873 kb on - strand, within Shewana3_3925 at 4718.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,715,444 - Shewana3_3923 0.84 -1.2 4,715,536 - Shewana3_3923 0.88 -0.2 4,715,681 - +0.6 4,715,689 + +0.4 4,715,697 - +0.2 4,715,961 - -0.3 4,715,998 + +0.5 4,716,066 + -0.6 4,716,130 + -0.1 4,716,130 + -0.4 4,716,310 + -0.5 4,716,604 + Shewana3_3924 0.13 -0.8 4,716,612 - Shewana3_3924 0.13 +0.0 4,716,612 - Shewana3_3924 0.13 +0.4 4,716,760 + Shewana3_3924 0.23 -0.2 4,716,791 + Shewana3_3924 0.25 +0.2 4,716,868 + Shewana3_3924 0.30 -1.2 4,716,997 - Shewana3_3924 0.38 -0.3 4,717,214 - Shewana3_3924 0.51 -0.3 4,717,273 + Shewana3_3924 0.55 -0.5 4,717,299 - Shewana3_3924 0.57 +0.3 4,717,328 + Shewana3_3924 0.59 -0.6 4,717,429 + Shewana3_3924 0.65 -0.3 4,717,486 - Shewana3_3924 0.69 -1.5 4,717,558 + Shewana3_3924 0.73 +0.0 4,717,614 + Shewana3_3924 0.77 -0.1 4,717,666 + Shewana3_3924 0.80 +0.3 4,717,822 + Shewana3_3924 0.90 -0.4 4,717,857 + +0.1 4,717,865 - +0.3 4,717,898 + -0.1 4,718,033 - +0.1 4,718,162 - -1.1 4,718,240 - Shewana3_3925 0.17 -0.3 4,718,403 + Shewana3_3925 0.34 -2.0 4,718,411 - Shewana3_3925 0.35 -0.2 4,718,421 + Shewana3_3925 0.36 -1.5 4,718,702 - Shewana3_3925 0.67 -0.2 4,718,773 + Shewana3_3925 0.74 +0.1 4,718,865 + Shewana3_3925 0.84 -0.7 4,718,865 + Shewana3_3925 0.84 -0.3 4,718,865 + Shewana3_3925 0.84 -2.0 4,718,873 - Shewana3_3925 0.85 -0.1 4,718,873 - Shewana3_3925 0.85 -0.5 4,718,873 - Shewana3_3925 0.85 +1.3 4,718,873 - Shewana3_3925 0.85 +0.5 4,718,974 - -0.5
Or see this region's nucleotide sequence