Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3920 and Shewana3_3921 are separated by 29 nucleotides Shewana3_3921 and Shewana3_3922 are separated by 76 nucleotides
Shewana3_3920: Shewana3_3920 - formate dehydrogenase alpha subunit (RefSeq), at 4,709,123 to 4,711,975
_3920
Shewana3_3921: Shewana3_3921 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,712,005 to 4,712,574
_3921
Shewana3_3922: Shewana3_3922 - formate dehydrogenase gamma subunit (RefSeq), at 4,712,651 to 4,713,634
_3922
Position (kb)
4712
4713 Strain fitness (log2 ratio)
-2
-1
0
1 at 4711.368 kb on + strand, within Shewana3_3920 at 4711.431 kb on - strand, within Shewana3_3920 at 4711.445 kb on + strand, within Shewana3_3920 at 4711.455 kb on - strand, within Shewana3_3920 at 4711.520 kb on + strand, within Shewana3_3920 at 4711.533 kb on - strand, within Shewana3_3920 at 4711.630 kb on + strand, within Shewana3_3920 at 4711.645 kb on + strand, within Shewana3_3920 at 4711.747 kb on + strand at 4711.795 kb on - strand at 4711.860 kb on + strand at 4711.868 kb on - strand at 4711.981 kb on + strand at 4711.988 kb on - strand at 4712.163 kb on - strand, within Shewana3_3921 at 4712.522 kb on + strand at 4712.695 kb on + strand at 4712.695 kb on + strand at 4712.795 kb on + strand, within Shewana3_3922 at 4712.803 kb on - strand, within Shewana3_3922 at 4712.863 kb on - strand, within Shewana3_3922 at 4712.877 kb on + strand, within Shewana3_3922 at 4712.877 kb on + strand, within Shewana3_3922 at 4713.283 kb on + strand, within Shewana3_3922 at 4713.283 kb on + strand, within Shewana3_3922 at 4713.306 kb on - strand, within Shewana3_3922 at 4713.388 kb on - strand, within Shewana3_3922 at 4713.438 kb on + strand, within Shewana3_3922 at 4713.443 kb on + strand, within Shewana3_3922 at 4713.478 kb on - strand, within Shewana3_3922 at 4713.520 kb on + strand, within Shewana3_3922 at 4713.539 kb on + strand at 4713.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,711,368 + Shewana3_3920 0.79 -0.5 4,711,431 - Shewana3_3920 0.81 +0.1 4,711,445 + Shewana3_3920 0.81 +0.1 4,711,455 - Shewana3_3920 0.82 -0.2 4,711,520 + Shewana3_3920 0.84 +0.2 4,711,533 - Shewana3_3920 0.84 +0.1 4,711,630 + Shewana3_3920 0.88 -0.1 4,711,645 + Shewana3_3920 0.88 -0.2 4,711,747 + -0.6 4,711,795 - -0.2 4,711,860 + +0.1 4,711,868 - -0.3 4,711,981 + -0.1 4,711,988 - +0.1 4,712,163 - Shewana3_3921 0.28 -1.0 4,712,522 + -0.1 4,712,695 + -1.9 4,712,695 + -0.2 4,712,795 + Shewana3_3922 0.15 -0.0 4,712,803 - Shewana3_3922 0.15 +0.1 4,712,863 - Shewana3_3922 0.22 +0.1 4,712,877 + Shewana3_3922 0.23 +0.3 4,712,877 + Shewana3_3922 0.23 +0.2 4,713,283 + Shewana3_3922 0.64 -0.1 4,713,283 + Shewana3_3922 0.64 +0.2 4,713,306 - Shewana3_3922 0.67 -0.5 4,713,388 - Shewana3_3922 0.75 -0.4 4,713,438 + Shewana3_3922 0.80 -0.2 4,713,443 + Shewana3_3922 0.80 +0.1 4,713,478 - Shewana3_3922 0.84 +0.4 4,713,520 + Shewana3_3922 0.88 +0.2 4,713,539 + -1.1 4,713,569 + +0.0
Or see this region's nucleotide sequence