Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3910 and Shewana3_3911 are separated by 296 nucleotides Shewana3_3911 and Shewana3_3912 overlap by 1 nucleotides Shewana3_3912 and Shewana3_3913 are separated by 186 nucleotides
Shewana3_3910: Shewana3_3910 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 4,698,727 to 4,699,623
_3910
Shewana3_3911: Shewana3_3911 - hypothetical protein (RefSeq), at 4,699,920 to 4,700,384
_3911
Shewana3_3912: Shewana3_3912 - hypothetical protein (RefSeq), at 4,700,384 to 4,701,052
_3912
Shewana3_3913: Shewana3_3913 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,701,239 to 4,702,900
_3913
Position (kb) 4699
4700
4701 Strain fitness (log2 ratio) -1
0
1 at 4698.959 kb on + strand, within Shewana3_3910 at 4698.964 kb on + strand, within Shewana3_3910 at 4699.004 kb on + strand, within Shewana3_3910 at 4699.012 kb on - strand, within Shewana3_3910 at 4699.127 kb on + strand, within Shewana3_3910 at 4699.149 kb on + strand, within Shewana3_3910 at 4699.149 kb on + strand, within Shewana3_3910 at 4699.157 kb on - strand, within Shewana3_3910 at 4699.172 kb on - strand, within Shewana3_3910 at 4699.175 kb on + strand, within Shewana3_3910 at 4699.276 kb on + strand, within Shewana3_3910 at 4699.284 kb on - strand, within Shewana3_3910 at 4699.366 kb on + strand, within Shewana3_3910 at 4699.439 kb on + strand, within Shewana3_3910 at 4699.655 kb on - strand at 4699.676 kb on + strand at 4699.870 kb on - strand at 4699.941 kb on - strand at 4700.056 kb on + strand, within Shewana3_3911 at 4700.056 kb on + strand, within Shewana3_3911 at 4700.056 kb on + strand, within Shewana3_3911 at 4700.056 kb on + strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.064 kb on - strand, within Shewana3_3911 at 4700.083 kb on - strand, within Shewana3_3911 at 4700.083 kb on - strand, within Shewana3_3911 at 4700.188 kb on - strand, within Shewana3_3911 at 4700.188 kb on - strand, within Shewana3_3911 at 4700.277 kb on - strand, within Shewana3_3911 at 4700.444 kb on - strand at 4700.665 kb on + strand, within Shewana3_3912 at 4700.682 kb on - strand, within Shewana3_3912 at 4700.761 kb on - strand, within Shewana3_3912 at 4700.785 kb on + strand, within Shewana3_3912 at 4700.870 kb on + strand, within Shewana3_3912 at 4701.010 kb on - strand at 4701.209 kb on + strand at 4701.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,698,959 + Shewana3_3910 0.26 -0.4 4,698,964 + Shewana3_3910 0.26 +0.8 4,699,004 + Shewana3_3910 0.31 -0.6 4,699,012 - Shewana3_3910 0.32 -0.2 4,699,127 + Shewana3_3910 0.45 +0.1 4,699,149 + Shewana3_3910 0.47 +0.2 4,699,149 + Shewana3_3910 0.47 +0.2 4,699,157 - Shewana3_3910 0.48 +1.2 4,699,172 - Shewana3_3910 0.50 +0.3 4,699,175 + Shewana3_3910 0.50 -0.4 4,699,276 + Shewana3_3910 0.61 +0.3 4,699,284 - Shewana3_3910 0.62 +0.4 4,699,366 + Shewana3_3910 0.71 -0.2 4,699,439 + Shewana3_3910 0.79 +0.9 4,699,655 - -0.3 4,699,676 + -0.8 4,699,870 - -0.1 4,699,941 - +0.9 4,700,056 + Shewana3_3911 0.29 -0.2 4,700,056 + Shewana3_3911 0.29 -0.0 4,700,056 + Shewana3_3911 0.29 +0.4 4,700,056 + Shewana3_3911 0.29 +1.1 4,700,064 - Shewana3_3911 0.31 -0.0 4,700,064 - Shewana3_3911 0.31 +0.3 4,700,064 - Shewana3_3911 0.31 -0.1 4,700,064 - Shewana3_3911 0.31 +0.1 4,700,064 - Shewana3_3911 0.31 +0.2 4,700,064 - Shewana3_3911 0.31 +0.2 4,700,064 - Shewana3_3911 0.31 -0.3 4,700,064 - Shewana3_3911 0.31 +0.4 4,700,083 - Shewana3_3911 0.35 +0.4 4,700,083 - Shewana3_3911 0.35 +0.0 4,700,188 - Shewana3_3911 0.58 +0.9 4,700,188 - Shewana3_3911 0.58 +0.0 4,700,277 - Shewana3_3911 0.77 +0.4 4,700,444 - +0.3 4,700,665 + Shewana3_3912 0.42 +0.1 4,700,682 - Shewana3_3912 0.45 +0.5 4,700,761 - Shewana3_3912 0.56 +0.5 4,700,785 + Shewana3_3912 0.60 +0.6 4,700,870 + Shewana3_3912 0.73 +0.2 4,701,010 - -0.6 4,701,209 + -0.8 4,701,353 + -0.1
Or see this region's nucleotide sequence