Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3880 and Shewana3_3881 overlap by 4 nucleotides Shewana3_3881 and Shewana3_3882 are separated by 106 nucleotides Shewana3_3882 and Shewana3_3883 overlap by 4 nucleotides Shewana3_3883 and Shewana3_3884 are separated by 18 nucleotides
Shewana3_3880: Shewana3_3880 - LppC family lipoprotein (RefSeq), at 4,660,296 to 4,662,179
_3880
Shewana3_3881: Shewana3_3881 - hypothetical protein (RefSeq), at 4,662,176 to 4,662,502
_3881
Shewana3_3882: Shewana3_3882 - phosphoheptose isomerase (RefSeq), at 4,662,609 to 4,663,202
_3882
Shewana3_3883: Shewana3_3883 - transport-associated (RefSeq), at 4,663,199 to 4,663,765
_3883
Shewana3_3884: Shewana3_3884 - hypothetical protein (RefSeq), at 4,663,784 to 4,664,704
_3884
Position (kb)
4662
4663
4664 Strain fitness (log2 ratio)
-2
-1
0
1 at 4661.821 kb on + strand, within Shewana3_3880 at 4661.848 kb on + strand, within Shewana3_3880 at 4662.230 kb on + strand, within Shewana3_3881 at 4662.238 kb on - strand, within Shewana3_3881 at 4662.382 kb on - strand, within Shewana3_3881 at 4662.629 kb on - strand at 4662.666 kb on + strand at 4662.677 kb on + strand, within Shewana3_3882 at 4662.782 kb on + strand, within Shewana3_3882 at 4662.845 kb on + strand, within Shewana3_3882 at 4663.002 kb on + strand, within Shewana3_3882 at 4663.037 kb on - strand, within Shewana3_3882 at 4663.099 kb on + strand, within Shewana3_3882 at 4663.201 kb on + strand at 4663.226 kb on - strand at 4663.424 kb on + strand, within Shewana3_3883 at 4663.436 kb on + strand, within Shewana3_3883 at 4663.583 kb on + strand, within Shewana3_3883 at 4663.612 kb on + strand, within Shewana3_3883 at 4663.695 kb on - strand, within Shewana3_3883 at 4663.722 kb on - strand at 4663.727 kb on - strand at 4664.109 kb on - strand, within Shewana3_3884 at 4664.149 kb on - strand, within Shewana3_3884 at 4664.184 kb on - strand, within Shewana3_3884 at 4664.185 kb on - strand, within Shewana3_3884
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,661,821 + Shewana3_3880 0.81 -0.8 4,661,848 + Shewana3_3880 0.82 -0.8 4,662,230 + Shewana3_3881 0.17 +0.2 4,662,238 - Shewana3_3881 0.19 +0.4 4,662,382 - Shewana3_3881 0.63 -1.3 4,662,629 - +0.7 4,662,666 + -2.2 4,662,677 + Shewana3_3882 0.11 -0.6 4,662,782 + Shewana3_3882 0.29 -1.8 4,662,845 + Shewana3_3882 0.40 -1.4 4,663,002 + Shewana3_3882 0.66 -0.6 4,663,037 - Shewana3_3882 0.72 +0.2 4,663,099 + Shewana3_3882 0.82 -0.4 4,663,201 + +0.2 4,663,226 - -2.2 4,663,424 + Shewana3_3883 0.40 +0.0 4,663,436 + Shewana3_3883 0.42 -0.2 4,663,583 + Shewana3_3883 0.68 +0.6 4,663,612 + Shewana3_3883 0.73 -0.0 4,663,695 - Shewana3_3883 0.87 -0.2 4,663,722 - -1.7 4,663,727 - -2.5 4,664,109 - Shewana3_3884 0.35 -0.7 4,664,149 - Shewana3_3884 0.40 +0.4 4,664,184 - Shewana3_3884 0.43 +0.4 4,664,185 - Shewana3_3884 0.44 -0.9
Or see this region's nucleotide sequence