Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3805

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3804 and Shewana3_3805 are separated by 310 nucleotidesShewana3_3805 and Shewana3_3806 are separated by 20 nucleotides Shewana3_3804: Shewana3_3804 - filamentation induced by cAMP protein Fic (RefSeq), at 4,568,836 to 4,569,951 _3804 Shewana3_3805: Shewana3_3805 - hypothetical protein (RefSeq), at 4,570,262 to 4,571,080 _3805 Shewana3_3806: Shewana3_3806 - major facilitator transporter (RefSeq), at 4,571,101 to 4,572,588 _3806 Position (kb) 4570 4571 4572Strain fitness (log2 ratio) -3 -2 -1 0 1at 4569.335 kb on - strand, within Shewana3_3804at 4569.410 kb on - strand, within Shewana3_3804at 4569.434 kb on + strand, within Shewana3_3804at 4569.550 kb on - strand, within Shewana3_3804at 4569.560 kb on - strand, within Shewana3_3804at 4569.604 kb on + strand, within Shewana3_3804at 4569.752 kb on + strand, within Shewana3_3804at 4569.798 kb on - strand, within Shewana3_3804at 4569.809 kb on + strand, within Shewana3_3804at 4569.899 kb on - strandat 4569.945 kb on - strandat 4570.061 kb on - strandat 4570.061 kb on - strandat 4570.179 kb on + strandat 4570.305 kb on + strandat 4570.325 kb on + strandat 4570.340 kb on - strandat 4570.518 kb on + strand, within Shewana3_3805at 4570.781 kb on - strand, within Shewana3_3805at 4570.854 kb on + strand, within Shewana3_3805at 4570.939 kb on - strand, within Shewana3_3805at 4571.140 kb on + strandat 4571.140 kb on + strandat 4571.308 kb on + strand, within Shewana3_3806at 4571.397 kb on - strand, within Shewana3_3806at 4571.484 kb on + strand, within Shewana3_3806at 4571.492 kb on - strand, within Shewana3_3806at 4571.492 kb on - strand, within Shewana3_3806at 4571.492 kb on - strand, within Shewana3_3806at 4571.725 kb on + strand, within Shewana3_3806at 4571.764 kb on + strand, within Shewana3_3806at 4571.885 kb on - strand, within Shewana3_3806

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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4,569,335 - Shewana3_3804 0.45 -0.1
4,569,410 - Shewana3_3804 0.51 +0.4
4,569,434 + Shewana3_3804 0.54 +0.3
4,569,550 - Shewana3_3804 0.64 +0.7
4,569,560 - Shewana3_3804 0.65 -0.7
4,569,604 + Shewana3_3804 0.69 +0.4
4,569,752 + Shewana3_3804 0.82 -0.2
4,569,798 - Shewana3_3804 0.86 -0.1
4,569,809 + Shewana3_3804 0.87 +0.2
4,569,899 - +0.2
4,569,945 - +0.3
4,570,061 - -0.7
4,570,061 - +0.5
4,570,179 + -1.5
4,570,305 + +0.1
4,570,325 + +0.8
4,570,340 - +0.1
4,570,518 + Shewana3_3805 0.31 -0.2
4,570,781 - Shewana3_3805 0.63 -1.0
4,570,854 + Shewana3_3805 0.72 -1.7
4,570,939 - Shewana3_3805 0.83 -0.0
4,571,140 + -2.8
4,571,140 + +0.1
4,571,308 + Shewana3_3806 0.14 -1.9
4,571,397 - Shewana3_3806 0.20 -0.1
4,571,484 + Shewana3_3806 0.26 -1.8
4,571,492 - Shewana3_3806 0.26 -0.3
4,571,492 - Shewana3_3806 0.26 -0.3
4,571,492 - Shewana3_3806 0.26 +0.2
4,571,725 + Shewana3_3806 0.42 +0.1
4,571,764 + Shewana3_3806 0.45 -0.5
4,571,885 - Shewana3_3806 0.53 +0.2

Or see this region's nucleotide sequence