Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3403 and Shewana3_3404 are separated by 162 nucleotides Shewana3_3404 and Shewana3_3405 are separated by 135 nucleotides
Shewana3_3403: Shewana3_3403 - sugar fermentation stimulation protein A (RefSeq), at 4,072,293 to 4,072,997
_3403
Shewana3_3404: Shewana3_3404 - TraR/DksA family transcriptional regulator (RefSeq), at 4,073,160 to 4,073,603
_3404
Shewana3_3405: Shewana3_3405 - glutamyl-tRNA synthetase, class Ic (RefSeq), at 4,073,739 to 4,074,638
_3405
Position (kb)
4073
4074 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4072.187 kb on + strand at 4072.222 kb on + strand at 4072.263 kb on - strand at 4072.285 kb on - strand at 4072.285 kb on - strand at 4072.298 kb on + strand at 4072.391 kb on + strand, within Shewana3_3403 at 4072.411 kb on - strand, within Shewana3_3403 at 4072.564 kb on - strand, within Shewana3_3403 at 4072.607 kb on - strand, within Shewana3_3403 at 4072.706 kb on - strand, within Shewana3_3403 at 4072.720 kb on + strand, within Shewana3_3403 at 4072.739 kb on - strand, within Shewana3_3403 at 4072.798 kb on + strand, within Shewana3_3403 at 4072.798 kb on + strand, within Shewana3_3403 at 4072.805 kb on + strand, within Shewana3_3403 at 4072.806 kb on - strand, within Shewana3_3403 at 4072.850 kb on - strand, within Shewana3_3403 at 4072.976 kb on + strand at 4073.042 kb on - strand at 4073.127 kb on + strand at 4073.264 kb on + strand, within Shewana3_3404 at 4073.395 kb on + strand, within Shewana3_3404 at 4073.576 kb on + strand at 4073.695 kb on + strand at 4073.804 kb on + strand at 4073.953 kb on + strand, within Shewana3_3405 at 4073.953 kb on + strand, within Shewana3_3405 at 4073.968 kb on + strand, within Shewana3_3405 at 4073.983 kb on + strand, within Shewana3_3405 at 4073.986 kb on - strand, within Shewana3_3405 at 4073.991 kb on - strand, within Shewana3_3405 at 4074.086 kb on + strand, within Shewana3_3405 at 4074.270 kb on - strand, within Shewana3_3405 at 4074.569 kb on + strand at 4074.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,072,187 + -0.5 4,072,222 + -1.3 4,072,263 - +0.6 4,072,285 - +0.0 4,072,285 - +0.4 4,072,298 + -1.2 4,072,391 + Shewana3_3403 0.14 +0.2 4,072,411 - Shewana3_3403 0.17 -1.1 4,072,564 - Shewana3_3403 0.38 -0.1 4,072,607 - Shewana3_3403 0.45 -0.5 4,072,706 - Shewana3_3403 0.59 -0.2 4,072,720 + Shewana3_3403 0.61 -0.0 4,072,739 - Shewana3_3403 0.63 +0.7 4,072,798 + Shewana3_3403 0.72 -0.6 4,072,798 + Shewana3_3403 0.72 -0.0 4,072,805 + Shewana3_3403 0.73 +0.0 4,072,806 - Shewana3_3403 0.73 -0.3 4,072,850 - Shewana3_3403 0.79 -0.5 4,072,976 + -0.1 4,073,042 - -0.1 4,073,127 + -2.7 4,073,264 + Shewana3_3404 0.23 -4.1 4,073,395 + Shewana3_3404 0.53 -1.8 4,073,576 + -2.6 4,073,695 + -0.3 4,073,804 + -0.6 4,073,953 + Shewana3_3405 0.24 -0.3 4,073,953 + Shewana3_3405 0.24 -0.4 4,073,968 + Shewana3_3405 0.25 -0.1 4,073,983 + Shewana3_3405 0.27 -0.0 4,073,986 - Shewana3_3405 0.27 -1.1 4,073,991 - Shewana3_3405 0.28 -1.7 4,074,086 + Shewana3_3405 0.39 +0.2 4,074,270 - Shewana3_3405 0.59 -0.1 4,074,569 + -0.2 4,074,587 + -0.2
Or see this region's nucleotide sequence