Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3400 and Shewana3_3401 are separated by 353 nucleotides Shewana3_3401 and Shewana3_3402 are separated by 211 nucleotides
Shewana3_3400: Shewana3_3400 - phosphoribulokinase/uridine kinase (RefSeq), at 4,068,804 to 4,069,691
_3400
Shewana3_3401: Shewana3_3401 - GCN5-related N-acetyltransferase (RefSeq), at 4,070,045 to 4,070,557
_3401
Shewana3_3402: Shewana3_3402 - aminopeptidase B (RefSeq), at 4,070,769 to 4,072,061
_3402
Position (kb)
4070
4071 Strain fitness (log2 ratio)
-1
0
1 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.194 kb on + strand, within Shewana3_3400 at 4069.202 kb on - strand, within Shewana3_3400 at 4069.218 kb on + strand, within Shewana3_3400 at 4069.320 kb on + strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.387 kb on - strand, within Shewana3_3400 at 4069.450 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.579 kb on + strand, within Shewana3_3400 at 4069.612 kb on + strand at 4069.675 kb on - strand at 4069.844 kb on + strand at 4069.868 kb on - strand at 4070.093 kb on + strand at 4070.141 kb on + strand, within Shewana3_3401 at 4070.143 kb on - strand, within Shewana3_3401 at 4070.339 kb on + strand, within Shewana3_3401 at 4070.383 kb on - strand, within Shewana3_3401 at 4070.723 kb on + strand at 4070.793 kb on + strand at 4070.834 kb on - strand at 4070.970 kb on + strand, within Shewana3_3402 at 4071.060 kb on - strand, within Shewana3_3402 at 4071.076 kb on + strand, within Shewana3_3402 at 4071.146 kb on - strand, within Shewana3_3402 at 4071.146 kb on - strand, within Shewana3_3402 at 4071.167 kb on - strand, within Shewana3_3402 at 4071.216 kb on + strand, within Shewana3_3402 at 4071.223 kb on + strand, within Shewana3_3402 at 4071.281 kb on + strand, within Shewana3_3402 at 4071.289 kb on - strand, within Shewana3_3402 at 4071.355 kb on - strand, within Shewana3_3402 at 4071.434 kb on + strand, within Shewana3_3402 at 4071.523 kb on - strand, within Shewana3_3402
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 4,069,079 - Shewana3_3400 0.31 +0.4 4,069,079 - Shewana3_3400 0.31 -0.0 4,069,194 + Shewana3_3400 0.44 -0.4 4,069,202 - Shewana3_3400 0.45 +0.4 4,069,218 + Shewana3_3400 0.47 -0.5 4,069,320 + Shewana3_3400 0.58 -0.6 4,069,328 - Shewana3_3400 0.59 +0.3 4,069,328 - Shewana3_3400 0.59 -0.7 4,069,387 - Shewana3_3400 0.66 -0.8 4,069,450 + Shewana3_3400 0.73 +0.1 4,069,558 + Shewana3_3400 0.85 +0.5 4,069,558 + Shewana3_3400 0.85 -0.2 4,069,579 + Shewana3_3400 0.87 -0.2 4,069,612 + -0.2 4,069,675 - -0.7 4,069,844 + -1.6 4,069,868 - +0.5 4,070,093 + -1.1 4,070,141 + Shewana3_3401 0.19 -0.7 4,070,143 - Shewana3_3401 0.19 -0.8 4,070,339 + Shewana3_3401 0.57 -0.3 4,070,383 - Shewana3_3401 0.66 -0.7 4,070,723 + +0.8 4,070,793 + +1.5 4,070,834 - +0.4 4,070,970 + Shewana3_3402 0.16 +0.3 4,071,060 - Shewana3_3402 0.23 -0.2 4,071,076 + Shewana3_3402 0.24 -1.5 4,071,146 - Shewana3_3402 0.29 +0.7 4,071,146 - Shewana3_3402 0.29 +0.8 4,071,167 - Shewana3_3402 0.31 +0.3 4,071,216 + Shewana3_3402 0.35 -0.3 4,071,223 + Shewana3_3402 0.35 -0.3 4,071,281 + Shewana3_3402 0.40 +0.6 4,071,289 - Shewana3_3402 0.40 +0.3 4,071,355 - Shewana3_3402 0.45 -0.0 4,071,434 + Shewana3_3402 0.51 +0.8 4,071,523 - Shewana3_3402 0.58 +0.3
Or see this region's nucleotide sequence