Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3334

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3333 and Shewana3_3334 are separated by 56 nucleotidesShewana3_3334 and Shewana3_3335 are separated by 2 nucleotides Shewana3_3333: Shewana3_3333 - methyltransferase small (RefSeq), at 3,995,499 to 3,996,224 _3333 Shewana3_3334: Shewana3_3334 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 3,996,281 to 3,997,276 _3334 Shewana3_3335: Shewana3_3335 - multi-sensor hybrid histidine kinase (RefSeq), at 3,997,279 to 4,000,647 _3335 Position (kb) 3996 3997 3998Strain fitness (log2 ratio) -2 -1 0 1at 3995.560 kb on - strandat 3995.602 kb on - strand, within Shewana3_3333at 3995.660 kb on + strand, within Shewana3_3333at 3995.843 kb on + strand, within Shewana3_3333at 3995.850 kb on - strand, within Shewana3_3333at 3995.935 kb on + strand, within Shewana3_3333at 3995.980 kb on + strand, within Shewana3_3333at 3996.070 kb on - strand, within Shewana3_3333at 3996.144 kb on + strand, within Shewana3_3333at 3996.218 kb on + strandat 3996.226 kb on - strandat 3996.237 kb on - strandat 3996.383 kb on + strand, within Shewana3_3334at 3996.575 kb on - strand, within Shewana3_3334at 3996.678 kb on - strand, within Shewana3_3334at 3996.799 kb on + strand, within Shewana3_3334at 3996.807 kb on - strand, within Shewana3_3334at 3996.807 kb on - strand, within Shewana3_3334at 3996.807 kb on - strand, within Shewana3_3334at 3996.957 kb on - strand, within Shewana3_3334at 3997.012 kb on - strand, within Shewana3_3334at 3997.142 kb on + strand, within Shewana3_3334at 3997.263 kb on + strandat 3997.266 kb on - strandat 3997.269 kb on - strandat 3997.431 kb on + strandat 3997.439 kb on - strandat 3997.598 kb on + strandat 3997.725 kb on + strand, within Shewana3_3335at 3997.733 kb on - strand, within Shewana3_3335at 3997.850 kb on + strand, within Shewana3_3335at 3997.858 kb on - strand, within Shewana3_3335at 3997.918 kb on + strand, within Shewana3_3335at 3998.059 kb on + strand, within Shewana3_3335at 3998.077 kb on + strand, within Shewana3_3335at 3998.207 kb on + strand, within Shewana3_3335

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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3,995,560 - -0.2
3,995,602 - Shewana3_3333 0.14 -0.9
3,995,660 + Shewana3_3333 0.22 -0.4
3,995,843 + Shewana3_3333 0.47 +0.0
3,995,850 - Shewana3_3333 0.48 -0.4
3,995,935 + Shewana3_3333 0.60 -0.2
3,995,980 + Shewana3_3333 0.66 +0.0
3,996,070 - Shewana3_3333 0.79 -0.0
3,996,144 + Shewana3_3333 0.89 +0.2
3,996,218 + -0.1
3,996,226 - +0.3
3,996,237 - +0.5
3,996,383 + Shewana3_3334 0.10 -0.3
3,996,575 - Shewana3_3334 0.30 +0.3
3,996,678 - Shewana3_3334 0.40 -0.0
3,996,799 + Shewana3_3334 0.52 +0.7
3,996,807 - Shewana3_3334 0.53 +0.2
3,996,807 - Shewana3_3334 0.53 +0.3
3,996,807 - Shewana3_3334 0.53 +0.8
3,996,957 - Shewana3_3334 0.68 -2.4
3,997,012 - Shewana3_3334 0.73 +1.1
3,997,142 + Shewana3_3334 0.86 -0.2
3,997,263 + -0.3
3,997,266 - +0.7
3,997,269 - -0.6
3,997,431 + -0.5
3,997,439 - +0.8
3,997,598 + -1.1
3,997,725 + Shewana3_3335 0.13 +1.1
3,997,733 - Shewana3_3335 0.13 +0.3
3,997,850 + Shewana3_3335 0.17 +0.0
3,997,858 - Shewana3_3335 0.17 -0.5
3,997,918 + Shewana3_3335 0.19 +0.0
3,998,059 + Shewana3_3335 0.23 +0.5
3,998,077 + Shewana3_3335 0.24 -1.6
3,998,207 + Shewana3_3335 0.28 +0.2

Or see this region's nucleotide sequence