Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3237 and Shewana3_3238 overlap by 4 nucleotides Shewana3_3238 and Shewana3_3239 are separated by 92 nucleotides Shewana3_3239 and Shewana3_3240 are separated by 18 nucleotides
Shewana3_3237: Shewana3_3237 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,882,611 to 3,883,342
_3237
Shewana3_3238: Shewana3_3238 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,883,339 to 3,883,776
_3238
Shewana3_3239: Shewana3_3239 - periplasmic binding protein (RefSeq), at 3,883,869 to 3,884,789
_3239
Shewana3_3240: Shewana3_3240 - transport system permease protein (RefSeq), at 3,884,808 to 3,885,824
_3240
Position (kb)
3883
3884
3885 Strain fitness (log2 ratio)
-2
-1
0
1 at 3883.014 kb on + strand, within Shewana3_3237 at 3883.087 kb on - strand, within Shewana3_3237 at 3883.087 kb on - strand, within Shewana3_3237 at 3883.092 kb on - strand, within Shewana3_3237 at 3883.097 kb on - strand, within Shewana3_3237 at 3883.211 kb on + strand, within Shewana3_3237 at 3883.344 kb on - strand at 3883.344 kb on - strand at 3883.453 kb on + strand, within Shewana3_3238 at 3883.585 kb on + strand, within Shewana3_3238 at 3883.607 kb on - strand, within Shewana3_3238 at 3883.691 kb on - strand, within Shewana3_3238 at 3883.691 kb on - strand, within Shewana3_3238 at 3883.784 kb on + strand at 3883.792 kb on - strand at 3883.827 kb on + strand at 3883.837 kb on + strand at 3883.845 kb on - strand at 3883.874 kb on + strand at 3883.987 kb on + strand, within Shewana3_3239 at 3884.249 kb on + strand, within Shewana3_3239 at 3884.290 kb on + strand, within Shewana3_3239 at 3884.520 kb on + strand, within Shewana3_3239 at 3884.556 kb on + strand, within Shewana3_3239 at 3884.671 kb on - strand, within Shewana3_3239 at 3884.691 kb on - strand, within Shewana3_3239 at 3884.703 kb on - strand at 3884.717 kb on - strand at 3884.811 kb on + strand at 3884.824 kb on + strand at 3884.889 kb on + strand at 3884.922 kb on + strand, within Shewana3_3240 at 3885.120 kb on + strand, within Shewana3_3240 at 3885.128 kb on - strand, within Shewana3_3240 at 3885.206 kb on - strand, within Shewana3_3240 at 3885.206 kb on - strand, within Shewana3_3240 at 3885.211 kb on + strand, within Shewana3_3240 at 3885.322 kb on + strand, within Shewana3_3240 at 3885.530 kb on + strand, within Shewana3_3240 at 3885.543 kb on - strand, within Shewana3_3240 at 3885.612 kb on - strand, within Shewana3_3240 at 3885.648 kb on + strand, within Shewana3_3240 at 3885.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,883,014 + Shewana3_3237 0.55 -0.4 3,883,087 - Shewana3_3237 0.65 -0.2 3,883,087 - Shewana3_3237 0.65 -0.4 3,883,092 - Shewana3_3237 0.66 +0.5 3,883,097 - Shewana3_3237 0.66 +0.1 3,883,211 + Shewana3_3237 0.82 -0.3 3,883,344 - -0.2 3,883,344 - +0.3 3,883,453 + Shewana3_3238 0.26 -1.6 3,883,585 + Shewana3_3238 0.56 -0.3 3,883,607 - Shewana3_3238 0.61 -1.3 3,883,691 - Shewana3_3238 0.80 -0.0 3,883,691 - Shewana3_3238 0.80 -0.8 3,883,784 + -0.7 3,883,792 - -1.1 3,883,827 + -0.9 3,883,837 + -1.4 3,883,845 - +0.0 3,883,874 + -0.7 3,883,987 + Shewana3_3239 0.13 +0.3 3,884,249 + Shewana3_3239 0.41 -1.6 3,884,290 + Shewana3_3239 0.46 -1.0 3,884,520 + Shewana3_3239 0.71 -0.3 3,884,556 + Shewana3_3239 0.75 -0.9 3,884,671 - Shewana3_3239 0.87 -0.9 3,884,691 - Shewana3_3239 0.89 -1.1 3,884,703 - -1.5 3,884,717 - +0.1 3,884,811 + -0.4 3,884,824 + -0.1 3,884,889 + +0.2 3,884,922 + Shewana3_3240 0.11 +0.2 3,885,120 + Shewana3_3240 0.31 -0.5 3,885,128 - Shewana3_3240 0.31 -0.1 3,885,206 - Shewana3_3240 0.39 -0.7 3,885,206 - Shewana3_3240 0.39 -0.3 3,885,211 + Shewana3_3240 0.40 -1.9 3,885,322 + Shewana3_3240 0.51 -2.0 3,885,530 + Shewana3_3240 0.71 +0.6 3,885,543 - Shewana3_3240 0.72 +0.2 3,885,612 - Shewana3_3240 0.79 +1.7 3,885,648 + Shewana3_3240 0.83 -0.9 3,885,731 - -0.2
Or see this region's nucleotide sequence