Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3154 and Shewana3_3155 are separated by 255 nucleotides Shewana3_3155 and Shewana3_3156 overlap by 1 nucleotides Shewana3_3156 and Shewana3_3157 are separated by 152 nucleotides
Shewana3_3154: Shewana3_3154 - putative sulfate transporter YchM (RefSeq), at 3,782,596 to 3,784,368
_3154
Shewana3_3155: Shewana3_3155 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 3,784,624 to 3,785,115
_3155
Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212
_3156
Shewana3_3157: Shewana3_3157 - diguanylate cyclase with GAF sensor (RefSeq), at 3,786,365 to 3,787,627
_3157
Position (kb)
3785
3786
3787 Strain fitness (log2 ratio)
-2
-1
0
1 at 3784.151 kb on + strand, within Shewana3_3154 at 3784.182 kb on + strand, within Shewana3_3154 at 3784.570 kb on - strand at 3784.570 kb on - strand at 3784.786 kb on - strand, within Shewana3_3155 at 3784.870 kb on + strand, within Shewana3_3155 at 3784.875 kb on + strand, within Shewana3_3155 at 3784.878 kb on - strand, within Shewana3_3155 at 3785.083 kb on + strand at 3785.083 kb on + strand at 3785.100 kb on + strand at 3785.175 kb on + strand at 3785.315 kb on - strand, within Shewana3_3156 at 3785.677 kb on + strand, within Shewana3_3156 at 3785.797 kb on - strand, within Shewana3_3156 at 3785.880 kb on - strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.019 kb on + strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.027 kb on - strand, within Shewana3_3156 at 3786.601 kb on - strand, within Shewana3_3157 at 3786.694 kb on - strand, within Shewana3_3157 at 3786.699 kb on - strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.756 kb on + strand, within Shewana3_3157 at 3786.764 kb on - strand, within Shewana3_3157 at 3786.924 kb on - strand, within Shewana3_3157 at 3786.969 kb on + strand, within Shewana3_3157 at 3787.093 kb on + strand, within Shewana3_3157
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,784,151 + Shewana3_3154 0.88 -1.0 3,784,182 + Shewana3_3154 0.89 +0.8 3,784,570 - -0.3 3,784,570 - -2.2 3,784,786 - Shewana3_3155 0.33 -1.3 3,784,870 + Shewana3_3155 0.50 -0.9 3,784,875 + Shewana3_3155 0.51 -0.9 3,784,878 - Shewana3_3155 0.52 +1.7 3,785,083 + -1.8 3,785,083 + +0.6 3,785,100 + -0.6 3,785,175 + -1.1 3,785,315 - Shewana3_3156 0.18 +1.7 3,785,677 + Shewana3_3156 0.51 -1.0 3,785,797 - Shewana3_3156 0.62 -2.6 3,785,880 - Shewana3_3156 0.70 -2.1 3,786,019 + Shewana3_3156 0.82 -1.0 3,786,019 + Shewana3_3156 0.82 -0.8 3,786,027 - Shewana3_3156 0.83 -1.3 3,786,027 - Shewana3_3156 0.83 -1.1 3,786,601 - Shewana3_3157 0.19 -1.7 3,786,694 - Shewana3_3157 0.26 -0.7 3,786,699 - Shewana3_3157 0.26 +0.7 3,786,756 + Shewana3_3157 0.31 -0.3 3,786,756 + Shewana3_3157 0.31 -0.8 3,786,764 - Shewana3_3157 0.32 +0.7 3,786,924 - Shewana3_3157 0.44 -0.3 3,786,969 + Shewana3_3157 0.48 -0.6 3,787,093 + Shewana3_3157 0.58 +0.3
Or see this region's nucleotide sequence