Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3100 and Shewana3_3101 are separated by 156 nucleotides Shewana3_3101 and Shewana3_3102 are separated by 44 nucleotides Shewana3_3102 and Shewana3_3103 are separated by 85 nucleotides
Shewana3_3100: Shewana3_3100 - XRE family transcriptional regulator (RefSeq), at 3,719,277 to 3,719,903
_3100
Shewana3_3101: Shewana3_3101 - FAD dependent oxidoreductase (RefSeq), at 3,720,060 to 3,721,367
_3101
Shewana3_3102: Shewana3_3102 - hypothetical protein (RefSeq), at 3,721,412 to 3,721,924
_3102
Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867
_3103
Position (kb)
3720
3721
3722 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3719.121 kb on - strand at 3719.230 kb on - strand at 3719.232 kb on + strand at 3719.232 kb on + strand at 3719.232 kb on + strand at 3719.240 kb on - strand at 3719.240 kb on - strand at 3719.240 kb on - strand at 3719.240 kb on - strand at 3719.240 kb on - strand at 3719.250 kb on - strand at 3719.293 kb on + strand at 3719.299 kb on - strand at 3719.364 kb on - strand, within Shewana3_3100 at 3719.453 kb on - strand, within Shewana3_3100 at 3719.583 kb on - strand, within Shewana3_3100 at 3719.614 kb on - strand, within Shewana3_3100 at 3719.800 kb on + strand, within Shewana3_3100 at 3719.808 kb on - strand, within Shewana3_3100 at 3719.877 kb on + strand at 3720.197 kb on - strand, within Shewana3_3101 at 3720.937 kb on + strand, within Shewana3_3101 at 3721.180 kb on + strand, within Shewana3_3101 at 3721.183 kb on - strand, within Shewana3_3101 at 3721.361 kb on + strand at 3721.406 kb on - strand at 3721.459 kb on + strand at 3721.546 kb on + strand, within Shewana3_3102 at 3721.590 kb on + strand, within Shewana3_3102 at 3721.707 kb on + strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.942 kb on + strand at 3721.948 kb on + strand at 3722.274 kb on - strand, within Shewana3_3103 at 3722.284 kb on - strand, within Shewana3_3103
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,719,121 - -1.0 3,719,230 - +0.1 3,719,232 + +0.8 3,719,232 + -0.6 3,719,232 + +1.8 3,719,240 - -1.8 3,719,240 - -1.4 3,719,240 - +0.8 3,719,240 - -1.1 3,719,240 - -0.6 3,719,250 - -0.2 3,719,293 + +2.8 3,719,299 - +0.3 3,719,364 - Shewana3_3100 0.14 +0.6 3,719,453 - Shewana3_3100 0.28 +0.8 3,719,583 - Shewana3_3100 0.49 -0.1 3,719,614 - Shewana3_3100 0.54 -0.2 3,719,800 + Shewana3_3100 0.83 +0.5 3,719,808 - Shewana3_3100 0.85 +0.2 3,719,877 + -1.4 3,720,197 - Shewana3_3101 0.10 +0.8 3,720,937 + Shewana3_3101 0.67 +0.2 3,721,180 + Shewana3_3101 0.86 +0.8 3,721,183 - Shewana3_3101 0.86 -0.2 3,721,361 + +0.8 3,721,406 - -1.2 3,721,459 + -0.2 3,721,546 + Shewana3_3102 0.26 -1.7 3,721,590 + Shewana3_3102 0.35 -0.4 3,721,707 + Shewana3_3102 0.58 +0.7 3,721,823 - Shewana3_3102 0.80 -0.2 3,721,823 - Shewana3_3102 0.80 -0.0 3,721,942 + -0.2 3,721,948 + +0.5 3,722,274 - Shewana3_3103 0.31 +0.3 3,722,284 - Shewana3_3103 0.32 -0.8
Or see this region's nucleotide sequence