Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2913 and Shewana3_2914 are separated by 1 nucleotides Shewana3_2914 and Shewana3_2915 are separated by 197 nucleotides Shewana3_2915 and Shewana3_2916 overlap by 1 nucleotides
Shewana3_2913: Shewana3_2913 - hypothetical protein (RefSeq), at 3,488,666 to 3,489,565
_2913
Shewana3_2914: Shewana3_2914 - Ion transport 2 domain-containing protein (RefSeq), at 3,489,567 to 3,489,977
_2914
Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653
_2915
Shewana3_2916: Shewana3_2916 - hypothetical protein (RefSeq), at 3,491,653 to 3,494,322
_2916
Position (kb)
3490
3491
3492 Strain fitness (log2 ratio)
-1
0
1
2 at 3489.350 kb on + strand, within Shewana3_2913 at 3489.371 kb on + strand, within Shewana3_2913 at 3489.732 kb on - strand, within Shewana3_2914 at 3489.734 kb on + strand, within Shewana3_2914 at 3490.003 kb on + strand at 3490.011 kb on - strand at 3490.011 kb on - strand at 3490.045 kb on - strand at 3490.728 kb on + strand, within Shewana3_2915 at 3490.881 kb on + strand, within Shewana3_2915 at 3490.904 kb on + strand, within Shewana3_2915 at 3491.067 kb on + strand, within Shewana3_2915 at 3491.414 kb on - strand at 3491.470 kb on + strand, within Shewana3_2915 at 3491.480 kb on + strand, within Shewana3_2915 at 3491.611 kb on + strand at 3491.886 kb on + strand at 3491.894 kb on - strand at 3491.927 kb on - strand, within Shewana3_2916 at 3491.927 kb on - strand, within Shewana3_2916 at 3492.117 kb on - strand, within Shewana3_2916 at 3492.126 kb on - strand, within Shewana3_2916 at 3492.288 kb on + strand, within Shewana3_2916 at 3492.426 kb on + strand, within Shewana3_2916 at 3492.473 kb on + strand, within Shewana3_2916
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,489,350 + Shewana3_2913 0.76 -0.7 3,489,371 + Shewana3_2913 0.78 +0.3 3,489,732 - Shewana3_2914 0.40 -1.3 3,489,734 + Shewana3_2914 0.41 -0.4 3,490,003 + +0.2 3,490,011 - -0.6 3,490,011 - -0.3 3,490,045 - +0.8 3,490,728 + Shewana3_2915 0.37 +0.2 3,490,881 + Shewana3_2915 0.48 +0.2 3,490,904 + Shewana3_2915 0.49 +1.2 3,491,067 + Shewana3_2915 0.60 -0.8 3,491,414 - +0.8 3,491,470 + Shewana3_2915 0.88 +0.4 3,491,480 + Shewana3_2915 0.88 -0.1 3,491,611 + -1.1 3,491,886 + +0.2 3,491,894 - +0.2 3,491,927 - Shewana3_2916 0.10 +0.8 3,491,927 - Shewana3_2916 0.10 +0.2 3,492,117 - Shewana3_2916 0.17 +1.8 3,492,126 - Shewana3_2916 0.18 +1.8 3,492,288 + Shewana3_2916 0.24 -0.6 3,492,426 + Shewana3_2916 0.29 -1.0 3,492,473 + Shewana3_2916 0.31 +0.3
Or see this region's nucleotide sequence