Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2822 and Shewana3_2823 are separated by 74 nucleotides Shewana3_2823 and Shewana3_2824 are separated by 448 nucleotides Shewana3_2824 and Shewana3_2825 overlap by 14 nucleotides Shewana3_2825 and Shewana3_2826 are separated by 131 nucleotides
Shewana3_2822: Shewana3_2822 - PTS system, glucose-like IIB subunint (RefSeq), at 3,370,959 to 3,372,317
_2822
Shewana3_2823: Shewana3_2823 - flavodoxin (RefSeq), at 3,372,392 to 3,372,856
_2823
Shewana3_2824: Shewana3_2824 - tRNA pseudouridine synthase C (RefSeq), at 3,373,305 to 3,374,159
_2824
Shewana3_2825: Shewana3_2825 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 3,374,146 to 3,374,481
_2825
Shewana3_2826: Shewana3_2826 - hypothetical protein (RefSeq), at 3,374,613 to 3,375,626
_2826
Position (kb)
3373
3374
3375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3373.117 kb on - strand at 3373.222 kb on + strand at 3373.335 kb on - strand at 3373.744 kb on + strand, within Shewana3_2824 at 3373.773 kb on + strand, within Shewana3_2824 at 3373.781 kb on + strand, within Shewana3_2824 at 3373.781 kb on - strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3374.046 kb on - strand, within Shewana3_2824 at 3374.080 kb on - strand at 3374.080 kb on - strand at 3374.199 kb on - strand, within Shewana3_2825 at 3374.224 kb on + strand, within Shewana3_2825 at 3374.243 kb on - strand, within Shewana3_2825 at 3374.289 kb on - strand, within Shewana3_2825 at 3374.290 kb on - strand, within Shewana3_2825 at 3374.338 kb on - strand, within Shewana3_2825 at 3374.396 kb on + strand, within Shewana3_2825 at 3374.486 kb on - strand at 3374.755 kb on - strand, within Shewana3_2826 at 3374.765 kb on - strand, within Shewana3_2826 at 3374.842 kb on + strand, within Shewana3_2826 at 3374.891 kb on + strand, within Shewana3_2826 at 3375.007 kb on - strand, within Shewana3_2826 at 3375.098 kb on + strand, within Shewana3_2826 at 3375.117 kb on + strand, within Shewana3_2826
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,372,818 + +1.8 3,372,818 + +0.2 3,372,818 + +0.2 3,372,818 + -1.2 3,372,818 + +0.8 3,372,818 + +1.8 3,372,818 + -0.5 3,372,818 + +0.2 3,372,818 + +0.8 3,372,818 + +0.8 3,372,818 + -0.4 3,372,818 + -0.5 3,372,826 - +0.6 3,372,826 - +0.7 3,372,826 - +0.1 3,372,826 - -0.3 3,372,826 - +0.3 3,372,826 - -1.9 3,372,826 - +0.3 3,372,826 - -0.2 3,372,826 - +0.6 3,372,826 - -0.3 3,372,826 - -0.9 3,373,117 - -0.4 3,373,222 + -1.8 3,373,335 - +0.5 3,373,744 + Shewana3_2824 0.51 -1.2 3,373,773 + Shewana3_2824 0.55 -0.8 3,373,781 + Shewana3_2824 0.56 -0.8 3,373,781 - Shewana3_2824 0.56 +0.1 3,373,991 + Shewana3_2824 0.80 -0.2 3,373,991 + Shewana3_2824 0.80 -1.6 3,374,046 - Shewana3_2824 0.87 +0.2 3,374,080 - -0.8 3,374,080 - +0.1 3,374,199 - Shewana3_2825 0.16 +0.1 3,374,224 + Shewana3_2825 0.23 +0.5 3,374,243 - Shewana3_2825 0.29 -0.2 3,374,289 - Shewana3_2825 0.43 +0.9 3,374,290 - Shewana3_2825 0.43 +0.3 3,374,338 - Shewana3_2825 0.57 +0.6 3,374,396 + Shewana3_2825 0.74 -1.0 3,374,486 - +0.7 3,374,755 - Shewana3_2826 0.14 +0.2 3,374,765 - Shewana3_2826 0.15 +1.0 3,374,842 + Shewana3_2826 0.23 -0.0 3,374,891 + Shewana3_2826 0.27 +0.0 3,375,007 - Shewana3_2826 0.39 +0.3 3,375,098 + Shewana3_2826 0.48 +0.6 3,375,117 + Shewana3_2826 0.50 -0.6
Or see this region's nucleotide sequence