Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2767 and Shewana3_2768 overlap by 1 nucleotides Shewana3_2768 and Shewana3_2769 are separated by 64 nucleotides
Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503
_2767
Shewana3_2768: Shewana3_2768 - enoyl-CoA hydratase (RefSeq), at 3,306,503 to 3,307,276
_2768
Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data) , at 3,307,341 to 3,308,498
_2769
Position (kb)
3306
3307
3308 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3305.510 kb on + strand, within Shewana3_2767 at 3305.675 kb on - strand, within Shewana3_2767 at 3305.704 kb on - strand, within Shewana3_2767 at 3305.873 kb on - strand, within Shewana3_2767 at 3305.978 kb on + strand, within Shewana3_2767 at 3305.986 kb on - strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767 at 3306.299 kb on + strand, within Shewana3_2767 at 3306.522 kb on + strand at 3306.560 kb on - strand at 3306.785 kb on - strand, within Shewana3_2768 at 3306.800 kb on - strand, within Shewana3_2768 at 3306.826 kb on - strand, within Shewana3_2768 at 3306.837 kb on - strand, within Shewana3_2768 at 3306.874 kb on - strand, within Shewana3_2768 at 3306.879 kb on - strand, within Shewana3_2768 at 3306.882 kb on + strand, within Shewana3_2768 at 3306.951 kb on - strand, within Shewana3_2768 at 3307.167 kb on + strand, within Shewana3_2768 at 3307.176 kb on - strand, within Shewana3_2768 at 3307.208 kb on - strand at 3307.256 kb on + strand at 3307.320 kb on + strand at 3307.458 kb on + strand, within Shewana3_2769 at 3307.576 kb on - strand, within Shewana3_2769 at 3307.728 kb on + strand, within Shewana3_2769 at 3307.728 kb on + strand, within Shewana3_2769 at 3307.736 kb on - strand, within Shewana3_2769 at 3307.736 kb on - strand, within Shewana3_2769 at 3307.845 kb on + strand, within Shewana3_2769 at 3307.985 kb on - strand, within Shewana3_2769 at 3308.002 kb on + strand, within Shewana3_2769 at 3308.010 kb on - strand, within Shewana3_2769 at 3308.178 kb on - strand, within Shewana3_2769 at 3308.184 kb on - strand, within Shewana3_2769 at 3308.186 kb on + strand, within Shewana3_2769
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,305,510 + Shewana3_2767 0.14 +0.5 3,305,675 - Shewana3_2767 0.28 +0.9 3,305,704 - Shewana3_2767 0.31 +1.3 3,305,873 - Shewana3_2767 0.45 -0.6 3,305,978 + Shewana3_2767 0.54 -2.9 3,305,986 - Shewana3_2767 0.55 -1.2 3,306,124 + Shewana3_2767 0.67 +1.0 3,306,124 + Shewana3_2767 0.67 +1.8 3,306,299 + Shewana3_2767 0.82 -0.5 3,306,522 + +0.8 3,306,560 - -0.1 3,306,785 - Shewana3_2768 0.36 +0.2 3,306,800 - Shewana3_2768 0.38 -0.3 3,306,826 - Shewana3_2768 0.42 +1.2 3,306,837 - Shewana3_2768 0.43 +1.0 3,306,874 - Shewana3_2768 0.48 +0.9 3,306,879 - Shewana3_2768 0.49 +0.2 3,306,882 + Shewana3_2768 0.49 -1.6 3,306,951 - Shewana3_2768 0.58 +0.9 3,307,167 + Shewana3_2768 0.86 -0.5 3,307,176 - Shewana3_2768 0.87 +0.8 3,307,208 - +0.6 3,307,256 + -1.4 3,307,320 + +0.6 3,307,458 + Shewana3_2769 0.10 -0.7 3,307,576 - Shewana3_2769 0.20 +0.7 3,307,728 + Shewana3_2769 0.33 +0.1 3,307,728 + Shewana3_2769 0.33 -0.1 3,307,736 - Shewana3_2769 0.34 +1.2 3,307,736 - Shewana3_2769 0.34 +1.6 3,307,845 + Shewana3_2769 0.44 -0.4 3,307,985 - Shewana3_2769 0.56 +0.7 3,308,002 + Shewana3_2769 0.57 +0.8 3,308,010 - Shewana3_2769 0.58 -0.3 3,308,178 - Shewana3_2769 0.72 +0.2 3,308,184 - Shewana3_2769 0.73 +0.1 3,308,186 + Shewana3_2769 0.73 +0.5
Or see this region's nucleotide sequence