Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2724 and Shewana3_2725 are separated by 151 nucleotides Shewana3_2725 and Shewana3_2726 are separated by 139 nucleotides
Shewana3_2724: Shewana3_2724 - GCN5-related N-acetyltransferase (RefSeq), at 3,255,834 to 3,256,268
_2724
Shewana3_2725: Shewana3_2725 - hypothetical protein (RefSeq), at 3,256,420 to 3,257,145
_2725
Shewana3_2726: Shewana3_2726 - hypothetical protein (RefSeq), at 3,257,285 to 3,258,676
_2726
Position (kb)
3256
3257
3258 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3255.841 kb on + strand at 3255.869 kb on + strand at 3255.974 kb on - strand, within Shewana3_2724 at 3256.011 kb on + strand, within Shewana3_2724 at 3256.128 kb on + strand, within Shewana3_2724 at 3256.255 kb on + strand at 3256.298 kb on - strand at 3256.327 kb on + strand at 3256.444 kb on + strand at 3256.618 kb on - strand, within Shewana3_2725 at 3256.634 kb on + strand, within Shewana3_2725 at 3256.653 kb on + strand, within Shewana3_2725 at 3256.731 kb on + strand, within Shewana3_2725 at 3256.739 kb on - strand, within Shewana3_2725 at 3256.765 kb on - strand, within Shewana3_2725 at 3256.825 kb on + strand, within Shewana3_2725 at 3256.911 kb on + strand, within Shewana3_2725 at 3256.929 kb on - strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.990 kb on - strand, within Shewana3_2725 at 3256.990 kb on - strand, within Shewana3_2725 at 3257.046 kb on + strand, within Shewana3_2725 at 3257.110 kb on + strand at 3257.152 kb on + strand at 3257.152 kb on + strand at 3257.204 kb on + strand at 3257.204 kb on + strand at 3257.204 kb on + strand at 3257.205 kb on + strand at 3257.212 kb on - strand at 3257.240 kb on + strand at 3257.240 kb on + strand at 3257.248 kb on - strand at 3257.248 kb on - strand at 3257.248 kb on - strand at 3257.266 kb on + strand at 3257.268 kb on + strand at 3257.273 kb on + strand at 3257.273 kb on + strand at 3257.275 kb on + strand at 3257.284 kb on - strand at 3257.284 kb on - strand at 3257.284 kb on - strand at 3257.289 kb on - strand at 3257.295 kb on + strand at 3257.303 kb on - strand at 3257.407 kb on + strand at 3257.414 kb on - strand at 3257.420 kb on - strand at 3257.422 kb on + strand at 3257.422 kb on + strand at 3257.427 kb on - strand, within Shewana3_2726 at 3257.430 kb on - strand, within Shewana3_2726 at 3257.430 kb on - strand, within Shewana3_2726 at 3257.437 kb on - strand, within Shewana3_2726 at 3257.478 kb on + strand, within Shewana3_2726 at 3257.486 kb on - strand, within Shewana3_2726 at 3257.498 kb on - strand, within Shewana3_2726 at 3257.499 kb on - strand, within Shewana3_2726 at 3257.521 kb on + strand, within Shewana3_2726 at 3257.526 kb on + strand, within Shewana3_2726 at 3257.528 kb on + strand, within Shewana3_2726 at 3257.534 kb on - strand, within Shewana3_2726 at 3257.536 kb on - strand, within Shewana3_2726 at 3257.623 kb on + strand, within Shewana3_2726 at 3257.639 kb on - strand, within Shewana3_2726 at 3257.712 kb on - strand, within Shewana3_2726 at 3257.739 kb on + strand, within Shewana3_2726 at 3257.740 kb on + strand, within Shewana3_2726 at 3257.741 kb on - strand, within Shewana3_2726 at 3257.756 kb on + strand, within Shewana3_2726 at 3257.782 kb on + strand, within Shewana3_2726 at 3257.790 kb on - strand, within Shewana3_2726 at 3257.790 kb on - strand, within Shewana3_2726 at 3257.888 kb on + strand, within Shewana3_2726 at 3257.895 kb on + strand, within Shewana3_2726 at 3257.909 kb on - strand, within Shewana3_2726 at 3257.930 kb on + strand, within Shewana3_2726 at 3257.984 kb on + strand, within Shewana3_2726 at 3257.996 kb on + strand, within Shewana3_2726 at 3258.014 kb on - strand, within Shewana3_2726 at 3258.014 kb on - strand, within Shewana3_2726 at 3258.021 kb on - strand, within Shewana3_2726 at 3258.047 kb on + strand, within Shewana3_2726 at 3258.072 kb on - strand, within Shewana3_2726 at 3258.082 kb on + strand, within Shewana3_2726
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,255,841 + -0.0 3,255,869 + +0.4 3,255,974 - Shewana3_2724 0.32 -0.2 3,256,011 + Shewana3_2724 0.41 -0.4 3,256,128 + Shewana3_2724 0.68 +0.1 3,256,255 + -0.1 3,256,298 - +1.8 3,256,327 + -0.4 3,256,444 + +0.9 3,256,618 - Shewana3_2725 0.27 -1.3 3,256,634 + Shewana3_2725 0.29 -0.7 3,256,653 + Shewana3_2725 0.32 -0.6 3,256,731 + Shewana3_2725 0.43 -0.2 3,256,739 - Shewana3_2725 0.44 +0.8 3,256,765 - Shewana3_2725 0.48 +1.8 3,256,825 + Shewana3_2725 0.56 -0.1 3,256,911 + Shewana3_2725 0.68 -1.8 3,256,929 - Shewana3_2725 0.70 -2.3 3,256,982 + Shewana3_2725 0.77 -2.7 3,256,982 + Shewana3_2725 0.77 -1.8 3,256,982 + Shewana3_2725 0.77 -1.1 3,256,990 - Shewana3_2725 0.79 +0.2 3,256,990 - Shewana3_2725 0.79 +0.8 3,257,046 + Shewana3_2725 0.86 -1.9 3,257,110 + -0.9 3,257,152 + -0.2 3,257,152 + +1.8 3,257,204 + -1.0 3,257,204 + -0.5 3,257,204 + -0.2 3,257,205 + -1.8 3,257,212 - -0.2 3,257,240 + +1.1 3,257,240 + +0.8 3,257,248 - -0.5 3,257,248 - -0.8 3,257,248 - -0.3 3,257,266 + +0.2 3,257,268 + +0.7 3,257,273 + +0.1 3,257,273 + -0.8 3,257,275 + -0.3 3,257,284 - -1.2 3,257,284 - -0.8 3,257,284 - +1.8 3,257,289 - -0.9 3,257,295 + +0.2 3,257,303 - -0.2 3,257,407 + -0.8 3,257,414 - -1.0 3,257,420 - +1.8 3,257,422 + -0.5 3,257,422 + +1.4 3,257,427 - Shewana3_2726 0.10 +2.1 3,257,430 - Shewana3_2726 0.10 +0.8 3,257,430 - Shewana3_2726 0.10 -0.5 3,257,437 - Shewana3_2726 0.11 +1.8 3,257,478 + Shewana3_2726 0.14 -1.8 3,257,486 - Shewana3_2726 0.14 -0.2 3,257,498 - Shewana3_2726 0.15 -1.3 3,257,499 - Shewana3_2726 0.15 +0.2 3,257,521 + Shewana3_2726 0.17 -0.5 3,257,526 + Shewana3_2726 0.17 +1.8 3,257,528 + Shewana3_2726 0.17 +0.4 3,257,534 - Shewana3_2726 0.18 +0.8 3,257,536 - Shewana3_2726 0.18 +1.8 3,257,623 + Shewana3_2726 0.24 +0.2 3,257,639 - Shewana3_2726 0.25 +0.2 3,257,712 - Shewana3_2726 0.31 +1.8 3,257,739 + Shewana3_2726 0.33 -0.8 3,257,740 + Shewana3_2726 0.33 -0.3 3,257,741 - Shewana3_2726 0.33 +1.8 3,257,756 + Shewana3_2726 0.34 -1.1 3,257,782 + Shewana3_2726 0.36 -0.6 3,257,790 - Shewana3_2726 0.36 +1.8 3,257,790 - Shewana3_2726 0.36 -1.2 3,257,888 + Shewana3_2726 0.43 +0.8 3,257,895 + Shewana3_2726 0.44 -2.0 3,257,909 - Shewana3_2726 0.45 +0.4 3,257,930 + Shewana3_2726 0.46 -0.2 3,257,984 + Shewana3_2726 0.50 +1.8 3,257,996 + Shewana3_2726 0.51 +1.2 3,258,014 - Shewana3_2726 0.52 +1.0 3,258,014 - Shewana3_2726 0.52 -0.2 3,258,021 - Shewana3_2726 0.53 +0.8 3,258,047 + Shewana3_2726 0.55 -0.5 3,258,072 - Shewana3_2726 0.57 +0.8 3,258,082 + Shewana3_2726 0.57 -1.8
Or see this region's nucleotide sequence