Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2722 and Shewana3_2723 are separated by 93 nucleotides Shewana3_2723 and Shewana3_2724 are separated by 756 nucleotides
Shewana3_2722: Shewana3_2722 - LysR family transcriptional regulator (RefSeq), at 3,253,167 to 3,254,054
_2722
Shewana3_2723: Shewana3_2723 - hypothetical protein (RefSeq), at 3,254,148 to 3,255,077
_2723
Shewana3_2724: Shewana3_2724 - GCN5-related N-acetyltransferase (RefSeq), at 3,255,834 to 3,256,268
_2724
Position (kb)
3254
3255
3256 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3253.291 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.548 kb on - strand, within Shewana3_2722 at 3253.634 kb on - strand, within Shewana3_2722 at 3253.810 kb on + strand, within Shewana3_2722 at 3253.869 kb on + strand, within Shewana3_2722 at 3253.869 kb on + strand, within Shewana3_2722 at 3253.877 kb on - strand, within Shewana3_2722 at 3253.966 kb on + strand at 3254.253 kb on + strand, within Shewana3_2723 at 3254.253 kb on + strand, within Shewana3_2723 at 3254.259 kb on + strand, within Shewana3_2723 at 3254.339 kb on + strand, within Shewana3_2723 at 3254.494 kb on + strand, within Shewana3_2723 at 3254.494 kb on + strand, within Shewana3_2723 at 3254.585 kb on + strand, within Shewana3_2723 at 3254.585 kb on + strand, within Shewana3_2723 at 3254.585 kb on + strand, within Shewana3_2723 at 3254.616 kb on - strand, within Shewana3_2723 at 3254.775 kb on - strand, within Shewana3_2723 at 3254.808 kb on + strand, within Shewana3_2723 at 3254.905 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723 at 3255.142 kb on + strand at 3255.169 kb on + strand at 3255.270 kb on + strand at 3255.841 kb on + strand at 3255.869 kb on + strand at 3255.974 kb on - strand, within Shewana3_2724 at 3256.011 kb on + strand, within Shewana3_2724
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,253,291 + Shewana3_2722 0.14 -1.0 3,253,306 + Shewana3_2722 0.16 -0.1 3,253,306 + Shewana3_2722 0.16 +0.1 3,253,306 + Shewana3_2722 0.16 +0.7 3,253,306 + Shewana3_2722 0.16 +0.2 3,253,306 + Shewana3_2722 0.16 -0.7 3,253,306 + Shewana3_2722 0.16 -0.5 3,253,306 + Shewana3_2722 0.16 -1.2 3,253,314 - Shewana3_2722 0.17 -0.6 3,253,314 - Shewana3_2722 0.17 +1.1 3,253,314 - Shewana3_2722 0.17 -0.5 3,253,548 - Shewana3_2722 0.43 +0.1 3,253,634 - Shewana3_2722 0.53 -0.3 3,253,810 + Shewana3_2722 0.72 +0.2 3,253,869 + Shewana3_2722 0.79 -0.5 3,253,869 + Shewana3_2722 0.79 +0.9 3,253,877 - Shewana3_2722 0.80 -0.5 3,253,966 + -0.8 3,254,253 + Shewana3_2723 0.11 -0.1 3,254,253 + Shewana3_2723 0.11 -0.3 3,254,259 + Shewana3_2723 0.12 +0.3 3,254,339 + Shewana3_2723 0.21 +0.2 3,254,494 + Shewana3_2723 0.37 +0.2 3,254,494 + Shewana3_2723 0.37 -1.2 3,254,585 + Shewana3_2723 0.47 -0.7 3,254,585 + Shewana3_2723 0.47 -1.0 3,254,585 + Shewana3_2723 0.47 -0.3 3,254,616 - Shewana3_2723 0.50 +0.0 3,254,775 - Shewana3_2723 0.67 -0.2 3,254,808 + Shewana3_2723 0.71 -3.3 3,254,905 + Shewana3_2723 0.81 -1.2 3,254,928 + Shewana3_2723 0.84 -2.2 3,254,928 + Shewana3_2723 0.84 -1.9 3,255,142 + -0.4 3,255,169 + +0.6 3,255,270 + +0.8 3,255,841 + -0.0 3,255,869 + +0.4 3,255,974 - Shewana3_2724 0.32 -0.2 3,256,011 + Shewana3_2724 0.41 -0.4
Or see this region's nucleotide sequence